Strain Fitness in Escherichia coli BW25113 around b2685
Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | octanol 0.08 vol% |
---|---|---|---|---|---|
remove | |||||
2,808,515 | + | ygaH | b2683 | 0.44 | -4.5 |
2,808,517 | - | ygaH | b2683 | 0.45 | +0.4 |
2,808,533 | + | ygaH | b2683 | 0.50 | -2.5 |
2,808,533 | + | ygaH | b2683 | 0.50 | +0.0 |
2,808,534 | - | ygaH | b2683 | 0.50 | +1.8 |
2,808,534 | - | ygaH | b2683 | 0.50 | +1.2 |
2,808,560 | - | ygaH | b2683 | 0.58 | +1.6 |
2,808,565 | - | +5.2 | |||
2,808,645 | + | ygaH | b2683 | 0.83 | -2.9 |
2,808,645 | + | ygaH | b2683 | 0.83 | -4.6 |
2,808,645 | + | ygaH | b2683 | 0.83 | -1.8 |
2,808,648 | - | ygaH | b2683 | 0.84 | -1.5 |
2,808,655 | + | ygaH | b2683 | 0.86 | -1.5 |
2,808,658 | - | ygaH | b2683 | 0.87 | +1.8 |
2,808,660 | - | ygaH | b2683 | 0.88 | +1.1 |
2,808,662 | + | ygaH | b2683 | 0.88 | -2.2 |
2,808,662 | + | ygaH | b2683 | 0.88 | -1.2 |
2,808,671 | - | +1.6 | |||
2,808,876 | - | mprA | b2684 | 0.16 | +5.6 |
2,809,004 | - | mprA | b2684 | 0.40 | +4.3 |
2,809,100 | + | mprA | b2684 | 0.58 | +4.5 |
2,809,100 | + | mprA | b2684 | 0.58 | +3.6 |
2,809,107 | + | mprA | b2684 | 0.59 | +5.0 |
2,809,200 | + | mprA | b2684 | 0.77 | +4.7 |
2,809,287 | + | +3.6 | |||
2,809,433 | - | +3.0 | |||
2,809,497 | + | +0.8 | |||
2,809,497 | + | +2.0 | |||
2,809,546 | - | +2.4 | |||
2,809,548 | - | -0.7 | |||
2,809,748 | - | emrA | b2685 | 0.25 | -0.3 |
2,809,748 | - | emrA | b2685 | 0.25 | -1.0 |
2,809,806 | - | emrA | b2685 | 0.30 | +1.7 |
2,809,931 | - | emrA | b2685 | 0.41 | +2.8 |
2,810,041 | + | emrA | b2685 | 0.50 | +2.7 |
2,810,097 | + | emrA | b2685 | 0.55 | +1.2 |
2,810,097 | + | emrA | b2685 | 0.55 | -0.7 |
2,810,097 | + | emrA | b2685 | 0.55 | +3.6 |
2,810,100 | - | emrA | b2685 | 0.55 | -2.0 |
2,810,100 | - | emrA | b2685 | 0.55 | +2.6 |
2,810,103 | - | emrA | b2685 | 0.56 | -2.2 |
2,810,127 | - | emrA | b2685 | 0.58 | -0.1 |
2,810,147 | - | emrA | b2685 | 0.60 | -1.6 |
2,810,204 | - | emrA | b2685 | 0.64 | -0.7 |
2,810,320 | + | emrA | b2685 | 0.74 | -0.2 |
2,810,339 | - | emrA | b2685 | 0.76 | +0.5 |
2,810,417 | - | emrA | b2685 | 0.83 | +1.9 |
2,810,443 | - | emrA | b2685 | 0.85 | +0.5 |
2,810,480 | + | emrA | b2685 | 0.88 | -3.5 |
2,810,482 | - | emrA | b2685 | 0.88 | +1.7 |
2,810,482 | - | emrA | b2685 | 0.88 | -1.2 |
2,810,503 | + | emrA | b2685 | 0.90 | -2.6 |
2,810,533 | + | +1.7 | |||
2,810,543 | + | +3.5 | |||
2,810,543 | + | -1.6 | |||
2,810,549 | - | -2.9 | |||
2,810,621 | + | -0.7 | |||
2,810,633 | + | -1.2 | |||
2,810,716 | + | -0.7 | |||
2,810,716 | + | +1.3 | |||
2,810,724 | - | -0.7 | |||
2,810,763 | - | -3.2 | |||
2,810,764 | + | +1.7 | |||
2,810,764 | + | +1.3 | |||
2,810,921 | + | emrB | b2686 | 0.18 | -1.2 |
2,811,019 | - | emrB | b2686 | 0.25 | -2.2 |
2,811,019 | - | emrB | b2686 | 0.25 | -2.2 |
2,811,034 | + | emrB | b2686 | 0.26 | +0.1 |
2,811,034 | + | emrB | b2686 | 0.26 | +0.8 |
2,811,151 | - | emrB | b2686 | 0.33 | +3.4 |
2,811,196 | - | emrB | b2686 | 0.36 | -1.1 |
2,811,196 | - | emrB | b2686 | 0.36 | +3.2 |
2,811,310 | + | emrB | b2686 | 0.44 | -0.4 |
2,811,431 | - | emrB | b2686 | 0.52 | -3.4 |
2,811,436 | - | emrB | b2686 | 0.52 | -1.5 |
2,811,505 | - | emrB | b2686 | 0.56 | +1.4 |
2,811,507 | - | emrB | b2686 | 0.56 | -3.3 |
2,811,507 | - | emrB | b2686 | 0.56 | -3.1 |
2,811,528 | + | +2.0 | |||
2,811,581 | - | emrB | b2686 | 0.61 | -2.8 |
Or see this region's nucleotide sequence