Strain Fitness in Escherichia coli BW25113 around b2611

Experiment: octanol 0.08 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntffh and ypjD are separated by 166 nucleotidesypjD and yfjD are separated by 20 nucleotides b2610: ffh - Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) (NCBI), at 2,744,456 to 2,745,817 ffh b2611: ypjD - predicted inner membrane protein (RefSeq), at 2,745,984 to 2,746,775 ypjD b4461: yfjD - predicted inner membrane protein (RefSeq), at 2,746,796 to 2,748,082 yfjD Position (kb) 2745 2746 2747Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2745.896 kb on - strandat 2745.896 kb on - strandat 2745.945 kb on - strandat 2745.945 kb on - strandat 2746.143 kb on - strand, within ypjDat 2746.191 kb on + strand, within ypjDat 2746.221 kb on - strand, within ypjDat 2746.257 kb on + strand, within ypjDat 2746.257 kb on + strand, within ypjDat 2746.257 kb on + strand, within ypjDat 2746.269 kb on + strand, within ypjDat 2746.269 kb on + strand, within ypjDat 2746.269 kb on + strand, within ypjDat 2746.277 kb on - strand, within ypjDat 2746.290 kb on + strand, within ypjDat 2746.301 kb on + strand, within ypjDat 2746.363 kb on + strand, within ypjDat 2746.425 kb on - strand, within ypjDat 2746.435 kb on - strand, within ypjDat 2746.503 kb on - strand, within ypjDat 2746.563 kb on + strand, within ypjDat 2746.563 kb on + strand, within ypjDat 2746.609 kb on + strand, within ypjDat 2746.627 kb on - strand, within ypjDat 2746.627 kb on - strand, within ypjDat 2746.645 kb on - strand, within ypjDat 2746.645 kb on - strand, within ypjDat 2746.763 kb on - strandat 2746.804 kb on + strandat 2746.817 kb on + strandat 2746.817 kb on + strandat 2746.820 kb on - strandat 2746.957 kb on + strand, within yfjDat 2746.981 kb on + strand, within yfjDat 2746.985 kb on - strand, within yfjDat 2747.009 kb on - strand, within yfjDat 2747.018 kb on + strand, within yfjDat 2747.152 kb on + strand, within yfjDat 2747.315 kb on - strand, within yfjDat 2747.315 kb on - strand, within yfjDat 2747.324 kb on + strand, within yfjDat 2747.332 kb on - strand, within yfjDat 2747.414 kb on - strand, within yfjDat 2747.414 kb on - strand, within yfjDat 2747.503 kb on - strand, within yfjDat 2747.503 kb on - strand, within yfjDat 2747.554 kb on + strand, within yfjDat 2747.647 kb on - strand, within yfjDat 2747.647 kb on - strand, within yfjDat 2747.654 kb on - strand, within yfjDat 2747.717 kb on - strand, within yfjDat 2747.740 kb on + strand, within yfjDat 2747.765 kb on - strand, within yfjD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
remove
2,745,896 - -1.9
2,745,896 - -0.2
2,745,945 - -0.0
2,745,945 - +2.7
2,746,143 - ypjD b2611 0.20 +1.0
2,746,191 + ypjD b2611 0.26 +0.9
2,746,221 - ypjD b2611 0.30 +2.5
2,746,257 + ypjD b2611 0.34 +2.2
2,746,257 + ypjD b2611 0.34 -1.8
2,746,257 + ypjD b2611 0.34 +0.5
2,746,269 + ypjD b2611 0.36 -2.4
2,746,269 + ypjD b2611 0.36 +0.6
2,746,269 + ypjD b2611 0.36 +1.0
2,746,277 - ypjD b2611 0.37 +2.9
2,746,290 + ypjD b2611 0.39 +0.6
2,746,301 + ypjD b2611 0.40 +1.5
2,746,363 + ypjD b2611 0.48 -1.9
2,746,425 - ypjD b2611 0.56 +0.2
2,746,435 - ypjD b2611 0.57 +2.5
2,746,503 - ypjD b2611 0.66 +1.9
2,746,563 + ypjD b2611 0.73 +1.8
2,746,563 + ypjD b2611 0.73 +1.0
2,746,609 + ypjD b2611 0.79 +2.5
2,746,627 - ypjD b2611 0.81 +0.4
2,746,627 - ypjD b2611 0.81 +2.7
2,746,645 - ypjD b2611 0.83 -2.5
2,746,645 - ypjD b2611 0.83 -2.2
2,746,763 - -1.1
2,746,804 + +2.2
2,746,817 + +0.0
2,746,817 + -1.9
2,746,820 - +1.8
2,746,957 + yfjD b4461 0.13 +0.9
2,746,981 + yfjD b4461 0.14 +1.4
2,746,985 - yfjD b4461 0.15 -1.1
2,747,009 - yfjD b4461 0.17 +3.2
2,747,018 + yfjD b4461 0.17 +3.6
2,747,152 + yfjD b4461 0.28 +3.0
2,747,315 - yfjD b4461 0.40 +2.4
2,747,315 - yfjD b4461 0.40 -0.3
2,747,324 + yfjD b4461 0.41 +1.4
2,747,332 - yfjD b4461 0.42 +1.0
2,747,414 - yfjD b4461 0.48 -2.3
2,747,414 - yfjD b4461 0.48 +1.3
2,747,503 - yfjD b4461 0.55 -1.6
2,747,503 - yfjD b4461 0.55 -2.9
2,747,554 + yfjD b4461 0.59 +2.6
2,747,647 - yfjD b4461 0.66 -1.0
2,747,647 - yfjD b4461 0.66 +3.5
2,747,654 - yfjD b4461 0.67 +1.6
2,747,717 - yfjD b4461 0.72 +3.1
2,747,740 + yfjD b4461 0.73 +0.3
2,747,765 - yfjD b4461 0.75 +1.0

Or see this region's nucleotide sequence