Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rseC and rseB overlap by 4 nucleotides rseB and rseA overlap by 1 nucleotides rseA and rpoE are separated by 32 nucleotides
b2570: rseC - RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI), at 2,705,344 to 2,705,823
rseC
b2571: rseB - periplasmic negative regulator of sigmaE (NCBI), at 2,705,820 to 2,706,776
rseB
b2572: rseA - anti-sigma factor (NCBI), at 2,706,776 to 2,707,426
rseA
b2573: rpoE - RNA polymerase, sigma 24 (sigma E) factor (NCBI), at 2,707,459 to 2,708,034
rpoE
Position (kb)
2706
2707
2708 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 2705.783 kb on - strand at 2705.783 kb on - strand at 2705.814 kb on - strand at 2705.915 kb on + strand at 2705.915 kb on + strand at 2705.923 kb on - strand, within rseB at 2705.987 kb on - strand, within rseB at 2706.013 kb on + strand, within rseB at 2706.190 kb on - strand, within rseB at 2706.190 kb on - strand, within rseB at 2706.211 kb on - strand, within rseB at 2706.307 kb on + strand, within rseB at 2706.315 kb on - strand, within rseB at 2706.315 kb on - strand, within rseB at 2706.322 kb on + strand, within rseB at 2706.397 kb on - strand, within rseB at 2706.399 kb on + strand, within rseB at 2706.524 kb on + strand, within rseB at 2706.524 kb on + strand, within rseB at 2706.576 kb on + strand, within rseB at 2706.601 kb on + strand, within rseB at 2706.601 kb on + strand, within rseB at 2706.654 kb on + strand, within rseB at 2706.696 kb on + strand at 2706.711 kb on - strand at 2706.711 kb on - strand at 2706.724 kb on - strand at 2706.738 kb on + strand at 2706.754 kb on - strand at 2706.754 kb on - strand at 2706.822 kb on - strand at 2706.822 kb on - strand at 2706.857 kb on - strand, within rseA at 2706.857 kb on - strand, within rseA at 2706.857 kb on - strand, within rseA at 2706.867 kb on - strand, within rseA at 2706.867 kb on - strand, within rseA at 2706.909 kb on - strand, within rseA at 2706.909 kb on - strand, within rseA at 2706.945 kb on - strand, within rseA at 2707.085 kb on - strand, within rseA at 2707.102 kb on - strand, within rseA at 2707.183 kb on + strand, within rseA at 2707.254 kb on + strand, within rseA at 2707.254 kb on + strand, within rseA at 2707.426 kb on - strand at 2707.436 kb on - strand at 2707.436 kb on - strand at 2707.437 kb on - strand at 2707.440 kb on + strand at 2708.179 kb on - strand at 2708.179 kb on - strand at 2708.218 kb on - strand at 2708.218 kb on - strand at 2708.221 kb on + strand at 2708.239 kb on - strand at 2708.289 kb on + strand at 2708.289 kb on + strand at 2708.309 kb on - strand at 2708.401 kb on - strand at 2708.406 kb on - strand at 2708.406 kb on - strand at 2708.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanol 0.08 vol% remove 2,705,783 - +4.3 2,705,783 - +3.6 2,705,814 - +4.1 2,705,915 + -1.2 2,705,915 + -0.5 2,705,923 - rseB b2571 0.11 -0.3 2,705,987 - rseB b2571 0.17 +0.6 2,706,013 + rseB b2571 0.20 +0.9 2,706,190 - rseB b2571 0.39 -1.7 2,706,190 - rseB b2571 0.39 -0.7 2,706,211 - rseB b2571 0.41 -2.4 2,706,307 + rseB b2571 0.51 -1.9 2,706,315 - rseB b2571 0.52 -1.4 2,706,315 - rseB b2571 0.52 -1.6 2,706,322 + rseB b2571 0.52 -0.6 2,706,397 - rseB b2571 0.60 -1.3 2,706,399 + rseB b2571 0.61 -3.3 2,706,524 + rseB b2571 0.74 -0.3 2,706,524 + rseB b2571 0.74 -2.1 2,706,576 + rseB b2571 0.79 +0.5 2,706,601 + rseB b2571 0.82 -1.9 2,706,601 + rseB b2571 0.82 +2.7 2,706,654 + rseB b2571 0.87 -1.2 2,706,696 + -4.2 2,706,711 - -4.2 2,706,711 - -2.0 2,706,724 - -3.5 2,706,738 + -4.4 2,706,754 - -2.9 2,706,754 - -1.8 2,706,822 - +1.0 2,706,822 - -1.2 2,706,857 - rseA b2572 0.12 -1.6 2,706,857 - rseA b2572 0.12 +1.9 2,706,857 - rseA b2572 0.12 -3.7 2,706,867 - rseA b2572 0.14 -2.5 2,706,867 - rseA b2572 0.14 -2.8 2,706,909 - rseA b2572 0.20 -1.9 2,706,909 - rseA b2572 0.20 -3.2 2,706,945 - rseA b2572 0.26 -1.4 2,707,085 - rseA b2572 0.47 -3.0 2,707,102 - rseA b2572 0.50 -3.0 2,707,183 + rseA b2572 0.63 -0.7 2,707,254 + rseA b2572 0.73 -0.3 2,707,254 + rseA b2572 0.73 -2.2 2,707,426 - -2.1 2,707,436 - -1.1 2,707,436 - +0.2 2,707,437 - +1.3 2,707,440 + +1.2 2,708,179 - -0.9 2,708,179 - +0.4 2,708,218 - -0.7 2,708,218 - -2.3 2,708,221 + +2.3 2,708,239 - -3.3 2,708,289 + +2.4 2,708,289 + +1.5 2,708,309 - -1.6 2,708,401 - -5.2 2,708,406 - -3.5 2,708,406 - -3.3 2,708,411 - -1.1
Or see this region's nucleotide sequence