Strain Fitness in Escherichia coli BW25113 around b2426

Experiment: octanol 0.08 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntcysP and ucpA are separated by 303 nucleotidesucpA and yfeT are separated by 128 nucleotides b2425: cysP - thiosulfate transporter subunit (NCBI), at 2,540,534 to 2,541,550 cysP b2426: ucpA - putative oxidoreductase (VIMSS), at 2,541,854 to 2,542,645 ucpA b2427: yfeT - predicted DNA-binding transcriptional regulator (NCBI), at 2,542,774 to 2,543,631 yfeT Position (kb) 2541 2542 2543Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2540.858 kb on + strand, within cysPat 2540.872 kb on + strand, within cysPat 2541.064 kb on + strand, within cysPat 2541.066 kb on + strand, within cysPat 2541.077 kb on - strand, within cysPat 2541.159 kb on + strand, within cysPat 2541.181 kb on - strand, within cysPat 2541.194 kb on + strand, within cysPat 2541.229 kb on - strand, within cysPat 2541.421 kb on - strand, within cysPat 2541.621 kb on + strandat 2541.699 kb on + strandat 2541.733 kb on + strandat 2542.113 kb on + strand, within ucpAat 2542.215 kb on - strand, within ucpAat 2542.432 kb on - strand, within ucpAat 2542.661 kb on + strandat 2542.661 kb on + strandat 2542.748 kb on + strandat 2542.796 kb on - strandat 2542.833 kb on - strandat 2542.833 kb on - strandat 2543.173 kb on - strand, within yfeTat 2543.193 kb on - strand, within yfeTat 2543.230 kb on - strand, within yfeTat 2543.231 kb on + strand, within yfeTat 2543.231 kb on + strand, within yfeTat 2543.365 kb on + strand, within yfeTat 2543.365 kb on + strand, within yfeTat 2543.376 kb on + strand, within yfeTat 2543.410 kb on + strand, within yfeTat 2543.428 kb on - strand, within yfeT

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
remove
2,540,858 + cysP b2425 0.32 -0.6
2,540,872 + cysP b2425 0.33 +1.7
2,541,064 + cysP b2425 0.52 +1.8
2,541,066 + cysP b2425 0.52 +1.8
2,541,077 - cysP b2425 0.53 +1.2
2,541,159 + cysP b2425 0.61 +2.3
2,541,181 - cysP b2425 0.64 +0.5
2,541,194 + cysP b2425 0.65 +1.5
2,541,229 - cysP b2425 0.68 +1.9
2,541,421 - cysP b2425 0.87 +0.9
2,541,621 + -1.3
2,541,699 + -0.0
2,541,733 + -1.6
2,542,113 + ucpA b2426 0.33 +0.9
2,542,215 - ucpA b2426 0.46 +2.1
2,542,432 - ucpA b2426 0.73 +2.0
2,542,661 + -0.4
2,542,661 + -1.6
2,542,748 + +0.4
2,542,796 - +0.1
2,542,833 - -0.9
2,542,833 - +2.1
2,543,173 - yfeT b2427 0.47 +1.6
2,543,193 - yfeT b2427 0.49 +0.3
2,543,230 - yfeT b2427 0.53 +1.0
2,543,231 + yfeT b2427 0.53 +0.6
2,543,231 + yfeT b2427 0.53 +0.4
2,543,365 + yfeT b2427 0.69 -2.2
2,543,365 + yfeT b2427 0.69 +3.0
2,543,376 + yfeT b2427 0.70 +0.1
2,543,410 + yfeT b2427 0.74 +0.8
2,543,428 - yfeT b2427 0.76 -1.0

Or see this region's nucleotide sequence