Strain Fitness in Escherichia coli BW25113 around b2307
Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | octanol 0.08 vol% |
---|---|---|---|---|---|
remove | |||||
2,421,694 | + | +0.0 | |||
2,421,771 | + | -2.1 | |||
2,421,771 | + | -1.9 | |||
2,421,782 | - | +0.3 | |||
2,421,790 | - | +0.4 | |||
2,421,793 | - | -1.1 | |||
2,421,793 | - | -1.6 | |||
2,421,793 | - | -2.5 | |||
2,421,793 | - | +2.2 | |||
2,421,806 | - | -0.5 | |||
2,421,860 | - | hisP | b2306 | 0.13 | -0.4 |
2,421,874 | - | hisP | b2306 | 0.15 | -0.5 |
2,421,918 | - | hisP | b2306 | 0.21 | -3.0 |
2,421,921 | + | hisP | b2306 | 0.21 | +1.0 |
2,421,928 | - | hisP | b2306 | 0.22 | -1.2 |
2,421,928 | - | hisP | b2306 | 0.22 | +0.6 |
2,421,963 | + | hisP | b2306 | 0.26 | -3.7 |
2,421,963 | + | hisP | b2306 | 0.26 | +0.5 |
2,421,971 | - | hisP | b2306 | 0.28 | +1.5 |
2,421,973 | + | hisP | b2306 | 0.28 | -1.1 |
2,421,981 | - | hisP | b2306 | 0.29 | -0.9 |
2,421,981 | - | hisP | b2306 | 0.29 | +0.6 |
2,422,005 | - | hisP | b2306 | 0.32 | +0.4 |
2,422,199 | + | hisP | b2306 | 0.57 | +0.8 |
2,422,199 | + | hisP | b2306 | 0.57 | -1.8 |
2,422,218 | - | hisP | b2306 | 0.59 | +0.7 |
2,422,232 | + | hisP | b2306 | 0.61 | -2.3 |
2,422,232 | + | hisP | b2306 | 0.61 | -1.0 |
2,422,255 | - | hisP | b2306 | 0.64 | -1.1 |
2,422,255 | - | hisP | b2306 | 0.64 | +3.3 |
2,422,375 | + | hisP | b2306 | 0.80 | -3.3 |
2,422,486 | - | +0.2 | |||
2,422,538 | - | -3.7 | |||
2,422,538 | - | +1.3 | |||
2,422,607 | + | +1.1 | |||
2,422,607 | + | +1.2 | |||
2,422,607 | + | -0.8 | |||
2,422,621 | + | hisM | b2307 | 0.11 | -1.4 |
2,422,627 | - | hisM | b2307 | 0.12 | +1.9 |
2,422,684 | - | hisM | b2307 | 0.20 | -0.5 |
2,422,684 | - | hisM | b2307 | 0.20 | -0.4 |
2,422,684 | - | hisM | b2307 | 0.20 | +1.5 |
2,422,711 | - | hisM | b2307 | 0.24 | -2.7 |
2,422,712 | - | hisM | b2307 | 0.24 | +0.1 |
2,422,730 | + | hisM | b2307 | 0.27 | +2.0 |
2,422,738 | - | hisM | b2307 | 0.28 | +0.5 |
2,422,740 | + | hisM | b2307 | 0.28 | -0.6 |
2,422,740 | + | hisM | b2307 | 0.28 | -2.0 |
2,422,765 | + | hisM | b2307 | 0.32 | +1.2 |
2,422,765 | - | hisM | b2307 | 0.32 | -2.0 |
2,422,788 | - | hisM | b2307 | 0.35 | +0.5 |
2,422,798 | - | hisM | b2307 | 0.36 | +2.0 |
2,422,836 | + | hisM | b2307 | 0.41 | -0.0 |
2,422,850 | - | hisM | b2307 | 0.43 | -0.2 |
2,422,850 | - | hisM | b2307 | 0.43 | -2.1 |
2,422,904 | - | hisM | b2307 | 0.51 | -0.3 |
2,422,942 | + | hisM | b2307 | 0.56 | -0.4 |
2,422,947 | - | hisM | b2307 | 0.57 | +0.9 |
2,422,962 | - | hisM | b2307 | 0.59 | +1.9 |
2,423,022 | + | hisM | b2307 | 0.67 | -1.5 |
2,423,038 | + | hisM | b2307 | 0.70 | -0.0 |
2,423,041 | - | hisM | b2307 | 0.70 | -2.8 |
2,423,145 | + | hisM | b2307 | 0.85 | -1.9 |
2,423,145 | + | hisM | b2307 | 0.85 | -1.9 |
2,423,199 | - | -1.7 | |||
2,423,199 | - | -2.1 | |||
2,423,233 | - | +1.4 | |||
2,423,240 | - | -1.8 | |||
2,423,240 | - | +0.7 | |||
2,423,265 | - | +1.0 | |||
2,423,265 | - | +1.3 | |||
2,423,267 | + | +1.4 | |||
2,423,280 | + | -0.8 | |||
2,423,280 | + | +0.9 | |||
2,423,310 | - | +1.0 | |||
2,423,310 | - | -1.5 | |||
2,423,346 | + | hisQ | b2308 | 0.14 | +1.2 |
2,423,421 | - | hisQ | b2308 | 0.25 | -3.5 |
2,423,426 | + | hisQ | b2308 | 0.25 | +1.5 |
2,423,490 | + | hisQ | b2308 | 0.35 | +1.6 |
2,423,566 | + | hisQ | b2308 | 0.46 | +1.7 |
2,423,572 | - | hisQ | b2308 | 0.47 | +0.7 |
2,423,641 | + | hisQ | b2308 | 0.57 | +1.1 |
2,423,670 | + | hisQ | b2308 | 0.61 | -2.3 |
2,423,696 | + | hisQ | b2308 | 0.65 | -1.7 |
2,423,696 | + | hisQ | b2308 | 0.65 | -2.0 |
2,423,702 | - | hisQ | b2308 | 0.66 | -1.9 |
2,423,702 | - | hisQ | b2308 | 0.66 | -2.6 |
2,423,752 | - | hisQ | b2308 | 0.73 | +3.1 |
2,423,779 | + | hisQ | b2308 | 0.77 | -1.1 |
2,423,786 | - | hisQ | b2308 | 0.78 | -1.5 |
2,423,830 | - | hisQ | b2308 | 0.84 | -2.5 |
2,423,830 | - | hisQ | b2308 | 0.84 | -2.6 |
2,423,866 | + | hisQ | b2308 | 0.89 | -2.8 |
2,423,866 | + | hisQ | b2308 | 0.89 | -1.1 |
2,423,866 | + | hisQ | b2308 | 0.89 | +0.3 |
2,423,866 | + | hisQ | b2308 | 0.89 | -1.7 |
2,423,866 | + | hisQ | b2308 | 0.89 | -1.7 |
2,423,940 | + | +0.8 | |||
2,424,014 | - | +2.1 | |||
2,424,158 | - | hisJ | b2309 | 0.17 | -1.4 |
2,424,158 | - | hisJ | b2309 | 0.17 | -1.5 |
2,424,158 | - | hisJ | b2309 | 0.17 | -3.1 |
2,424,239 | - | hisJ | b2309 | 0.27 | +1.2 |
Or see this region's nucleotide sequence