Strain Fitness in Escherichia coli BW25113 around b2250
Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | octanol 0.08 vol% |
---|---|---|---|---|---|
remove | |||||
2,360,855 | - | yfaY | b2249 | 0.33 | -2.0 |
2,360,855 | - | yfaY | b2249 | 0.33 | +0.3 |
2,360,896 | + | yfaY | b2249 | 0.37 | +0.3 |
2,361,049 | + | yfaY | b2249 | 0.50 | +2.1 |
2,361,057 | - | yfaY | b2249 | 0.50 | -1.6 |
2,361,100 | - | yfaY | b2249 | 0.54 | -2.7 |
2,361,100 | - | yfaY | b2249 | 0.54 | +0.3 |
2,361,200 | + | yfaY | b2249 | 0.62 | +0.8 |
2,361,257 | + | yfaY | b2249 | 0.67 | +0.5 |
2,361,301 | + | yfaY | b2249 | 0.70 | -0.7 |
2,361,512 | + | yfaY | b2249 | 0.88 | -1.8 |
2,361,512 | + | yfaY | b2249 | 0.88 | +1.9 |
2,361,518 | - | yfaY | b2249 | 0.89 | -1.0 |
2,361,518 | - | yfaY | b2249 | 0.89 | -1.0 |
2,361,596 | - | +2.8 | |||
2,361,712 | + | -0.3 | |||
2,361,815 | + | b2250 | b2250 | 0.11 | -0.3 |
2,361,860 | + | b2250 | b2250 | 0.19 | +1.0 |
2,361,869 | - | b2250 | b2250 | 0.21 | +2.5 |
2,361,869 | - | b2250 | b2250 | 0.21 | +1.0 |
2,361,926 | - | b2250 | b2250 | 0.31 | -0.0 |
2,362,040 | + | b2250 | b2250 | 0.52 | +2.0 |
2,362,209 | + | b2250 | b2250 | 0.84 | -3.6 |
2,362,214 | + | b2250 | b2250 | 0.85 | +2.9 |
2,362,221 | + | b2250 | b2250 | 0.86 | +3.6 |
2,362,239 | - | b2250 | b2250 | 0.89 | +1.0 |
2,362,244 | - | +2.6 | |||
2,362,244 | - | -0.1 | |||
2,362,246 | + | +2.1 | |||
2,362,307 | + | -0.4 | |||
2,362,307 | + | +1.3 | |||
2,362,316 | - | +1.1 | |||
2,362,345 | + | +0.6 | |||
2,362,345 | + | +2.7 | |||
2,362,351 | - | +1.4 | |||
2,362,351 | - | -2.1 | |||
2,362,351 | - | +0.8 | |||
2,362,351 | - | +0.7 | |||
2,362,351 | - | -1.0 | |||
2,362,351 | - | +1.4 | |||
2,362,351 | - | -0.4 | |||
2,362,351 | - | +1.0 | |||
2,362,351 | - | -0.3 | |||
2,362,351 | - | +1.0 | |||
2,362,353 | + | +0.2 | |||
2,362,353 | + | -1.1 | |||
2,362,353 | + | -0.5 | |||
2,362,353 | + | -0.5 | |||
2,362,353 | + | +2.1 | |||
2,362,353 | + | -3.0 | |||
2,362,357 | + | +1.4 | |||
2,362,361 | + | -2.4 | |||
2,362,361 | - | +0.5 | |||
2,362,361 | - | +1.3 | |||
2,362,361 | - | -1.9 | |||
2,362,361 | - | +2.2 | |||
2,362,361 | - | +2.2 | |||
2,362,361 | - | -0.3 | |||
2,362,361 | - | +3.6 | |||
2,362,365 | - | +0.8 | |||
2,362,366 | + | -1.6 | |||
2,362,366 | + | -1.8 | |||
2,362,399 | + | -0.1 | |||
2,362,475 | + | -2.0 | |||
2,362,486 | - | -0.4 | |||
2,362,488 | - | +0.9 | |||
2,362,488 | - | +1.8 | |||
2,362,528 | + | +0.2 | |||
2,362,531 | - | +0.6 | |||
2,362,533 | + | +1.0 | |||
2,362,534 | + | +3.2 | |||
2,362,534 | + | +1.2 | |||
2,362,541 | - | +1.2 | |||
2,362,586 | + | -2.7 | |||
2,362,590 | - | -1.5 | |||
2,362,590 | - | +0.3 | |||
2,362,591 | + | -1.2 | |||
2,362,599 | - | -0.2 | |||
2,362,599 | - | -1.3 | |||
2,362,600 | - | -1.3 | |||
2,362,600 | - | -0.3 | |||
2,362,601 | - | -2.1 | |||
2,362,601 | - | -3.0 | |||
2,362,634 | + | yfaO | b2251 | 0.14 | -2.5 |
2,362,688 | - | yfaO | b2251 | 0.26 | +0.5 |
2,362,691 | + | yfaO | b2251 | 0.27 | +0.1 |
2,362,691 | + | yfaO | b2251 | 0.27 | -2.5 |
2,362,691 | + | yfaO | b2251 | 0.27 | -0.8 |
2,362,691 | + | yfaO | b2251 | 0.27 | +1.1 |
2,362,691 | + | yfaO | b2251 | 0.27 | -0.7 |
2,362,699 | - | yfaO | b2251 | 0.29 | +0.1 |
2,362,757 | + | yfaO | b2251 | 0.42 | -2.6 |
2,362,772 | + | yfaO | b2251 | 0.46 | +2.4 |
2,362,772 | + | yfaO | b2251 | 0.46 | -0.7 |
2,362,815 | + | yfaO | b2251 | 0.56 | +1.5 |
2,362,815 | + | yfaO | b2251 | 0.56 | -0.1 |
2,362,822 | - | yfaO | b2251 | 0.58 | -1.3 |
2,362,822 | - | yfaO | b2251 | 0.58 | +1.5 |
2,362,919 | - | yfaO | b2251 | 0.81 | +0.7 |
2,362,931 | - | yfaO | b2251 | 0.83 | +1.3 |
2,362,994 | + | +2.6 | |||
2,363,002 | + | +1.3 | |||
2,363,002 | + | +1.6 | |||
2,363,003 | + | +0.3 | |||
2,363,008 | + | -1.1 | |||
2,363,008 | + | -1.7 | |||
2,363,082 | + | +1.9 | |||
2,363,082 | + | +0.2 | |||
2,363,084 | + | -2.7 | |||
2,363,088 | + | -3.0 | |||
2,363,093 | + | +2.2 | |||
2,363,093 | + | -0.1 | |||
2,363,126 | - | ais | b2252 | 0.14 | -0.9 |
2,363,142 | - | ais | b2252 | 0.17 | +2.5 |
2,363,153 | + | ais | b2252 | 0.19 | +1.4 |
2,363,244 | + | ais | b2252 | 0.34 | -2.5 |
2,363,244 | + | ais | b2252 | 0.34 | -0.3 |
2,363,275 | + | ais | b2252 | 0.39 | -2.4 |
2,363,275 | + | ais | b2252 | 0.39 | -2.2 |
Or see this region's nucleotide sequence