Strain Fitness in Escherichia coli BW25113 around b2137
Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | octanol 0.08 vol% |
---|---|---|---|---|---|
remove | |||||
2,223,531 | + | yohC | b2135 | 0.79 | +0.5 |
2,223,573 | - | yohC | b2135 | 0.86 | -0.2 |
2,223,647 | + | -0.3 | |||
2,223,831 | + | -1.4 | |||
2,223,879 | + | +0.2 | |||
2,224,007 | - | yohD | b2136 | 0.32 | -0.1 |
2,224,171 | - | yohD | b2136 | 0.60 | -0.1 |
2,224,249 | - | yohD | b2136 | 0.74 | +1.0 |
2,224,348 | - | +0.9 | |||
2,224,358 | + | -1.5 | |||
2,224,417 | - | -1.1 | |||
2,224,529 | - | -0.9 | |||
2,224,541 | - | -1.0 | |||
2,224,578 | + | -1.3 | |||
2,224,713 | - | yohF | b2137 | 0.24 | +2.0 |
2,224,872 | - | yohF | b2137 | 0.45 | +0.7 |
2,224,902 | + | yohF | b2137 | 0.49 | -0.9 |
2,224,902 | + | yohF | b2137 | 0.49 | +2.9 |
2,224,942 | + | yohF | b2137 | 0.54 | -2.9 |
2,224,992 | - | yohF | b2137 | 0.60 | -1.2 |
2,224,992 | - | yohF | b2137 | 0.60 | +0.3 |
2,224,994 | - | yohF | b2137 | 0.61 | +3.1 |
2,224,994 | - | yohF | b2137 | 0.61 | +0.6 |
2,225,063 | - | yohF | b2137 | 0.70 | -3.3 |
2,225,103 | - | yohF | b2137 | 0.75 | +2.0 |
2,225,133 | + | yohF | b2137 | 0.79 | +2.2 |
2,225,163 | + | yohF | b2137 | 0.83 | +0.7 |
2,225,199 | - | yohF | b2137 | 0.88 | -2.4 |
2,225,292 | - | -2.9 | |||
2,225,409 | + | +1.2 | |||
2,225,429 | - | +0.0 | |||
2,225,476 | - | +0.7 | |||
2,225,538 | + | mdtQ | b2139 | 0.13 | +0.2 |
2,225,672 | - | mdtQ | b2139 | 0.23 | -2.7 |
2,225,711 | + | mdtQ | b2139 | 0.25 | -0.6 |
2,225,719 | - | mdtQ | b2139 | 0.26 | -0.2 |
2,225,756 | - | mdtQ | b2139 | 0.29 | -1.7 |
2,225,756 | - | mdtQ | b2139 | 0.29 | -3.5 |
2,225,777 | + | mdtQ | b2139 | 0.30 | -0.4 |
2,225,795 | + | mdtQ | b2139 | 0.31 | -3.6 |
2,225,795 | + | mdtQ | b2139 | 0.31 | -0.7 |
2,225,843 | + | mdtQ | b2139 | 0.35 | -0.3 |
2,225,862 | + | mdtQ | b2139 | 0.36 | -1.9 |
2,225,862 | + | mdtQ | b2139 | 0.36 | -0.2 |
2,225,867 | - | mdtQ | b2139 | 0.36 | +0.3 |
2,225,899 | + | mdtQ | b2139 | 0.39 | -1.6 |
2,225,899 | + | mdtQ | b2139 | 0.39 | +1.1 |
2,225,906 | + | mdtQ | b2139 | 0.39 | +1.4 |
2,225,917 | - | mdtQ | b2139 | 0.40 | -0.1 |
2,225,964 | - | mdtQ | b2139 | 0.43 | -2.3 |
2,225,964 | - | mdtQ | b2139 | 0.43 | +1.5 |
2,225,970 | + | mdtQ | b2139 | 0.44 | +0.8 |
2,226,046 | - | mdtQ | b2139 | 0.49 | -0.3 |
2,226,046 | - | mdtQ | b2139 | 0.49 | -0.8 |
2,226,097 | + | mdtQ | b2139 | 0.52 | -0.2 |
2,226,097 | + | mdtQ | b2139 | 0.52 | -1.7 |
2,226,118 | + | mdtQ | b2139 | 0.54 | +0.3 |
2,226,126 | - | mdtQ | b2139 | 0.54 | +2.2 |
Or see this region's nucleotide sequence