Strain Fitness in Escherichia coli BW25113 around b2122
Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | octanol 0.08 vol% |
---|---|---|---|---|---|
remove | |||||
2,206,144 | + | yehP | b2121 | 0.14 | +1.3 |
2,206,144 | - | yehP | b2121 | 0.14 | -0.6 |
2,206,144 | - | yehP | b2121 | 0.14 | +2.5 |
2,206,189 | + | yehP | b2121 | 0.18 | -4.2 |
2,206,202 | - | yehP | b2121 | 0.19 | +0.5 |
2,206,257 | - | yehP | b2121 | 0.24 | +1.2 |
2,206,257 | - | yehP | b2121 | 0.24 | -0.1 |
2,206,296 | - | yehP | b2121 | 0.27 | -0.7 |
2,206,390 | - | yehP | b2121 | 0.35 | +0.5 |
2,206,390 | - | yehP | b2121 | 0.35 | +1.6 |
2,206,547 | + | yehP | b2121 | 0.49 | +1.8 |
2,206,547 | + | yehP | b2121 | 0.49 | +0.8 |
2,206,609 | + | yehP | b2121 | 0.55 | -1.0 |
2,206,686 | + | yehP | b2121 | 0.61 | +1.2 |
2,206,776 | - | yehP | b2121 | 0.69 | +0.1 |
2,206,809 | + | yehP | b2121 | 0.72 | +1.1 |
2,206,809 | + | yehP | b2121 | 0.72 | -2.2 |
2,206,824 | - | yehP | b2121 | 0.73 | +1.3 |
2,206,855 | - | yehP | b2121 | 0.76 | +1.9 |
2,207,171 | - | -1.4 | |||
2,207,171 | - | -0.2 | |||
2,207,253 | - | +0.7 | |||
2,207,469 | + | yehQ | b2122 | 0.17 | +1.1 |
2,207,500 | - | yehQ | b2122 | 0.19 | -0.3 |
2,207,524 | + | yehQ | b2122 | 0.20 | +1.5 |
2,207,629 | + | yehQ | b2122 | 0.25 | -0.3 |
2,207,682 | - | yehQ | b2122 | 0.28 | +2.2 |
2,207,949 | - | yehQ | b2122 | 0.41 | +1.1 |
2,208,004 | + | yehQ | b2122 | 0.44 | +0.1 |
2,208,048 | + | yehQ | b2122 | 0.46 | +0.9 |
2,208,088 | + | yehQ | b2122 | 0.48 | -3.0 |
2,208,096 | - | yehQ | b2122 | 0.49 | +1.5 |
2,208,153 | + | yehQ | b2122 | 0.52 | +2.6 |
2,208,204 | + | yehQ | b2122 | 0.54 | -2.6 |
2,208,264 | - | yehQ | b2122 | 0.57 | -1.9 |
2,208,566 | + | yehQ | b2122 | 0.72 | +2.3 |
2,208,624 | - | yehQ | b2122 | 0.75 | +1.4 |
2,208,642 | - | yehQ | b2122 | 0.76 | -3.9 |
2,208,679 | - | yehQ | b2122 | 0.78 | +1.3 |
2,208,766 | + | yehQ | b2122 | 0.82 | +1.7 |
2,208,861 | + | yehQ | b2122 | 0.87 | +1.6 |
2,208,861 | + | yehQ | b2122 | 0.87 | +2.5 |
2,208,866 | + | yehQ | b2122 | 0.87 | +0.8 |
2,208,869 | - | yehQ | b2122 | 0.87 | +1.0 |
2,208,891 | + | yehQ | b2122 | 0.88 | -1.2 |
2,208,905 | + | yehQ | b2122 | 0.89 | -1.8 |
2,208,905 | + | yehQ | b2122 | 0.89 | -2.8 |
2,208,913 | - | yehQ | b2122 | 0.90 | +0.9 |
2,208,924 | - | -0.1 | |||
2,208,932 | - | -1.4 | |||
2,208,940 | - | +1.6 | |||
2,208,943 | - | -1.3 | |||
2,208,943 | - | -2.2 | |||
2,208,950 | + | +2.3 | |||
2,208,960 | + | +2.4 | |||
2,208,980 | + | +0.2 | |||
2,208,980 | + | -2.5 | |||
2,208,980 | + | +0.8 | |||
2,209,024 | - | -0.2 | |||
2,209,063 | + | -0.6 | |||
2,209,113 | - | +1.8 | |||
2,209,125 | - | -0.7 | |||
2,209,125 | - | +0.2 | |||
2,209,154 | + | +0.8 | |||
2,209,154 | + | +1.4 | |||
2,209,157 | - | +4.8 | |||
2,209,157 | - | -1.2 | |||
2,209,162 | - | +0.5 | |||
2,209,164 | + | +1.4 | |||
2,209,164 | + | -0.8 | |||
2,209,172 | - | +2.3 | |||
2,209,172 | - | +0.4 | |||
2,209,172 | - | +0.1 | |||
2,209,172 | - | -2.0 | |||
2,209,176 | + | +0.8 | |||
2,209,184 | - | +0.2 | |||
2,209,184 | - | +2.9 | |||
2,209,187 | + | -3.1 | |||
2,209,187 | + | -0.2 | |||
2,209,189 | + | +0.6 | |||
2,209,195 | - | +0.9 | |||
2,209,195 | - | -0.3 | |||
2,209,195 | - | -0.0 | |||
2,209,206 | - | -0.1 | |||
2,209,208 | + | -0.3 | |||
2,209,352 | - | yehR | b2123 | 0.23 | +2.6 |
2,209,352 | - | yehR | b2123 | 0.23 | +0.2 |
2,209,377 | + | yehR | b2123 | 0.28 | -2.4 |
2,209,377 | + | yehR | b2123 | 0.28 | -2.7 |
2,209,390 | - | yehR | b2123 | 0.31 | +0.7 |
2,209,396 | + | yehR | b2123 | 0.32 | -0.6 |
2,209,449 | - | yehR | b2123 | 0.44 | +1.9 |
2,209,962 | - | yehS | b2124 | 0.45 | -0.7 |
2,209,962 | - | yehS | b2124 | 0.45 | +0.6 |
2,209,964 | - | yehS | b2124 | 0.46 | +0.3 |
2,209,966 | - | yehS | b2124 | 0.46 | +4.0 |
2,209,966 | - | yehS | b2124 | 0.46 | +1.5 |
2,210,041 | - | yehS | b2124 | 0.62 | +0.1 |
2,210,106 | - | yehS | b2124 | 0.76 | -2.5 |
2,210,106 | - | yehS | b2124 | 0.76 | -2.6 |
Or see this region's nucleotide sequence