Strain Fitness in Escherichia coli BW25113 around b2122

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyehP and yehQ overlap by 4 nucleotidesyehQ and yehR are separated by 124 nucleotidesyehR and yehS are separated by 39 nucleotides b2121: yehP - hypothetical protein (NCBI), at 2,205,989 to 2,207,125 yehP b2122: yehQ - orf, hypothetical protein (VIMSS), at 2,207,122 to 2,209,122 yehQ b2123: yehR - orf, hypothetical protein (VIMSS), at 2,209,247 to 2,209,708 yehR b2124: yehS - hypothetical protein (NCBI), at 2,209,748 to 2,210,218 yehS Position (kb) 2207 2208 2209 2210Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 2206.144 kb on + strand, within yehPat 2206.144 kb on - strand, within yehPat 2206.144 kb on - strand, within yehPat 2206.189 kb on + strand, within yehPat 2206.202 kb on - strand, within yehPat 2206.257 kb on - strand, within yehPat 2206.257 kb on - strand, within yehPat 2206.296 kb on - strand, within yehPat 2206.390 kb on - strand, within yehPat 2206.390 kb on - strand, within yehPat 2206.547 kb on + strand, within yehPat 2206.547 kb on + strand, within yehPat 2206.609 kb on + strand, within yehPat 2206.686 kb on + strand, within yehPat 2206.776 kb on - strand, within yehPat 2206.809 kb on + strand, within yehPat 2206.809 kb on + strand, within yehPat 2206.824 kb on - strand, within yehPat 2206.855 kb on - strand, within yehPat 2207.171 kb on - strandat 2207.171 kb on - strandat 2207.253 kb on - strandat 2207.469 kb on + strand, within yehQat 2207.500 kb on - strand, within yehQat 2207.524 kb on + strand, within yehQat 2207.629 kb on + strand, within yehQat 2207.682 kb on - strand, within yehQat 2207.949 kb on - strand, within yehQat 2208.004 kb on + strand, within yehQat 2208.048 kb on + strand, within yehQat 2208.088 kb on + strand, within yehQat 2208.096 kb on - strand, within yehQat 2208.153 kb on + strand, within yehQat 2208.204 kb on + strand, within yehQat 2208.264 kb on - strand, within yehQat 2208.566 kb on + strand, within yehQat 2208.624 kb on - strand, within yehQat 2208.642 kb on - strand, within yehQat 2208.679 kb on - strand, within yehQat 2208.766 kb on + strand, within yehQat 2208.861 kb on + strand, within yehQat 2208.861 kb on + strand, within yehQat 2208.866 kb on + strand, within yehQat 2208.869 kb on - strand, within yehQat 2208.891 kb on + strand, within yehQat 2208.905 kb on + strand, within yehQat 2208.905 kb on + strand, within yehQat 2208.913 kb on - strand, within yehQat 2208.924 kb on - strandat 2208.932 kb on - strandat 2208.940 kb on - strandat 2208.943 kb on - strandat 2208.943 kb on - strandat 2208.950 kb on + strandat 2208.960 kb on + strandat 2208.980 kb on + strandat 2208.980 kb on + strandat 2208.980 kb on + strandat 2209.024 kb on - strandat 2209.063 kb on + strandat 2209.113 kb on - strandat 2209.125 kb on - strandat 2209.125 kb on - strandat 2209.154 kb on + strandat 2209.154 kb on + strandat 2209.157 kb on - strandat 2209.157 kb on - strandat 2209.162 kb on - strandat 2209.164 kb on + strandat 2209.164 kb on + strandat 2209.172 kb on - strandat 2209.172 kb on - strandat 2209.172 kb on - strandat 2209.172 kb on - strandat 2209.176 kb on + strandat 2209.184 kb on - strandat 2209.184 kb on - strandat 2209.187 kb on + strandat 2209.187 kb on + strandat 2209.189 kb on + strandat 2209.195 kb on - strandat 2209.195 kb on - strandat 2209.195 kb on - strandat 2209.206 kb on - strandat 2209.208 kb on + strandat 2209.352 kb on - strand, within yehRat 2209.352 kb on - strand, within yehRat 2209.377 kb on + strand, within yehRat 2209.377 kb on + strand, within yehRat 2209.390 kb on - strand, within yehRat 2209.396 kb on + strand, within yehRat 2209.449 kb on - strand, within yehRat 2209.962 kb on - strand, within yehSat 2209.962 kb on - strand, within yehSat 2209.964 kb on - strand, within yehSat 2209.966 kb on - strand, within yehSat 2209.966 kb on - strand, within yehSat 2210.041 kb on - strand, within yehSat 2210.106 kb on - strand, within yehSat 2210.106 kb on - strand, within yehS

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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2,206,144 + yehP b2121 0.14 +1.3
2,206,144 - yehP b2121 0.14 -0.6
2,206,144 - yehP b2121 0.14 +2.5
2,206,189 + yehP b2121 0.18 -4.2
2,206,202 - yehP b2121 0.19 +0.5
2,206,257 - yehP b2121 0.24 +1.2
2,206,257 - yehP b2121 0.24 -0.1
2,206,296 - yehP b2121 0.27 -0.7
2,206,390 - yehP b2121 0.35 +0.5
2,206,390 - yehP b2121 0.35 +1.6
2,206,547 + yehP b2121 0.49 +1.8
2,206,547 + yehP b2121 0.49 +0.8
2,206,609 + yehP b2121 0.55 -1.0
2,206,686 + yehP b2121 0.61 +1.2
2,206,776 - yehP b2121 0.69 +0.1
2,206,809 + yehP b2121 0.72 +1.1
2,206,809 + yehP b2121 0.72 -2.2
2,206,824 - yehP b2121 0.73 +1.3
2,206,855 - yehP b2121 0.76 +1.9
2,207,171 - -1.4
2,207,171 - -0.2
2,207,253 - +0.7
2,207,469 + yehQ b2122 0.17 +1.1
2,207,500 - yehQ b2122 0.19 -0.3
2,207,524 + yehQ b2122 0.20 +1.5
2,207,629 + yehQ b2122 0.25 -0.3
2,207,682 - yehQ b2122 0.28 +2.2
2,207,949 - yehQ b2122 0.41 +1.1
2,208,004 + yehQ b2122 0.44 +0.1
2,208,048 + yehQ b2122 0.46 +0.9
2,208,088 + yehQ b2122 0.48 -3.0
2,208,096 - yehQ b2122 0.49 +1.5
2,208,153 + yehQ b2122 0.52 +2.6
2,208,204 + yehQ b2122 0.54 -2.6
2,208,264 - yehQ b2122 0.57 -1.9
2,208,566 + yehQ b2122 0.72 +2.3
2,208,624 - yehQ b2122 0.75 +1.4
2,208,642 - yehQ b2122 0.76 -3.9
2,208,679 - yehQ b2122 0.78 +1.3
2,208,766 + yehQ b2122 0.82 +1.7
2,208,861 + yehQ b2122 0.87 +1.6
2,208,861 + yehQ b2122 0.87 +2.5
2,208,866 + yehQ b2122 0.87 +0.8
2,208,869 - yehQ b2122 0.87 +1.0
2,208,891 + yehQ b2122 0.88 -1.2
2,208,905 + yehQ b2122 0.89 -1.8
2,208,905 + yehQ b2122 0.89 -2.8
2,208,913 - yehQ b2122 0.90 +0.9
2,208,924 - -0.1
2,208,932 - -1.4
2,208,940 - +1.6
2,208,943 - -1.3
2,208,943 - -2.2
2,208,950 + +2.3
2,208,960 + +2.4
2,208,980 + +0.2
2,208,980 + -2.5
2,208,980 + +0.8
2,209,024 - -0.2
2,209,063 + -0.6
2,209,113 - +1.8
2,209,125 - -0.7
2,209,125 - +0.2
2,209,154 + +0.8
2,209,154 + +1.4
2,209,157 - +4.8
2,209,157 - -1.2
2,209,162 - +0.5
2,209,164 + +1.4
2,209,164 + -0.8
2,209,172 - +2.3
2,209,172 - +0.4
2,209,172 - +0.1
2,209,172 - -2.0
2,209,176 + +0.8
2,209,184 - +0.2
2,209,184 - +2.9
2,209,187 + -3.1
2,209,187 + -0.2
2,209,189 + +0.6
2,209,195 - +0.9
2,209,195 - -0.3
2,209,195 - -0.0
2,209,206 - -0.1
2,209,208 + -0.3
2,209,352 - yehR b2123 0.23 +2.6
2,209,352 - yehR b2123 0.23 +0.2
2,209,377 + yehR b2123 0.28 -2.4
2,209,377 + yehR b2123 0.28 -2.7
2,209,390 - yehR b2123 0.31 +0.7
2,209,396 + yehR b2123 0.32 -0.6
2,209,449 - yehR b2123 0.44 +1.9
2,209,962 - yehS b2124 0.45 -0.7
2,209,962 - yehS b2124 0.45 +0.6
2,209,964 - yehS b2124 0.46 +0.3
2,209,966 - yehS b2124 0.46 +4.0
2,209,966 - yehS b2124 0.46 +1.5
2,210,041 - yehS b2124 0.62 +0.1
2,210,106 - yehS b2124 0.76 -2.5
2,210,106 - yehS b2124 0.76 -2.6

Or see this region's nucleotide sequence