Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rfbX and rfbC overlap by 4 nucleotides rfbC and rfbA overlap by 1 nucleotides rfbA and rfbD are separated by 57 nucleotides
b2037: rfbX - predicted polisoprenol-linked O-antigen transporter (NCBI), at 2,106,361 to 2,107,608
rfbX
b2038: rfbC - dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI), at 2,107,605 to 2,108,162
rfbC
b2039: rfbA - glucose-1-phosphate thymidylyltransferase (NCBI), at 2,108,162 to 2,109,043
rfbA
b2040: rfbD - dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI), at 2,109,101 to 2,110,000
rfbD
Position (kb)
2107
2108
2109 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2106.612 kb on - strand, within rfbX at 2106.642 kb on - strand, within rfbX at 2106.642 kb on - strand, within rfbX at 2106.673 kb on - strand, within rfbX at 2106.673 kb on - strand, within rfbX at 2106.674 kb on - strand, within rfbX at 2106.674 kb on - strand, within rfbX at 2106.674 kb on - strand, within rfbX at 2106.674 kb on - strand, within rfbX at 2106.674 kb on - strand, within rfbX at 2106.674 kb on - strand, within rfbX at 2106.726 kb on - strand, within rfbX at 2106.760 kb on - strand, within rfbX at 2106.764 kb on - strand, within rfbX at 2106.769 kb on - strand, within rfbX at 2106.771 kb on - strand, within rfbX at 2106.771 kb on - strand, within rfbX at 2106.784 kb on - strand, within rfbX at 2106.817 kb on - strand, within rfbX at 2106.817 kb on - strand, within rfbX at 2106.848 kb on - strand, within rfbX at 2106.862 kb on - strand, within rfbX at 2106.862 kb on - strand, within rfbX at 2106.988 kb on - strand, within rfbX at 2106.989 kb on - strand, within rfbX at 2106.989 kb on - strand, within rfbX at 2107.009 kb on - strand, within rfbX at 2107.009 kb on - strand, within rfbX at 2107.142 kb on - strand, within rfbX at 2107.155 kb on - strand, within rfbX at 2107.198 kb on - strand, within rfbX at 2107.211 kb on - strand, within rfbX at 2107.222 kb on - strand, within rfbX at 2107.249 kb on - strand, within rfbX at 2107.257 kb on - strand, within rfbX at 2107.314 kb on - strand, within rfbX at 2107.314 kb on - strand, within rfbX at 2107.319 kb on - strand, within rfbX at 2107.400 kb on - strand, within rfbX at 2107.455 kb on - strand, within rfbX at 2107.458 kb on - strand, within rfbX at 2107.460 kb on - strand, within rfbX at 2107.505 kb on - strand at 2107.505 kb on - strand at 2107.519 kb on - strand at 2107.530 kb on - strand at 2107.530 kb on - strand at 2107.574 kb on - strand at 2107.574 kb on - strand at 2107.574 kb on - strand at 2107.575 kb on - strand at 2107.575 kb on - strand at 2107.577 kb on - strand at 2107.624 kb on - strand at 2107.632 kb on - strand at 2107.632 kb on - strand at 2107.633 kb on - strand at 2107.634 kb on - strand at 2107.649 kb on - strand at 2107.649 kb on - strand at 2107.692 kb on - strand, within rfbC at 2107.692 kb on - strand, within rfbC at 2107.717 kb on - strand, within rfbC at 2107.725 kb on - strand, within rfbC at 2107.801 kb on - strand, within rfbC at 2107.801 kb on - strand at 2107.804 kb on - strand, within rfbC at 2107.811 kb on - strand, within rfbC at 2107.825 kb on + strand, within rfbC at 2107.935 kb on - strand, within rfbC at 2107.938 kb on - strand, within rfbC at 2107.938 kb on - strand, within rfbC at 2107.940 kb on - strand, within rfbC at 2107.946 kb on - strand, within rfbC at 2107.946 kb on - strand, within rfbC at 2107.948 kb on - strand, within rfbC at 2107.948 kb on - strand, within rfbC at 2107.953 kb on - strand, within rfbC at 2107.977 kb on - strand, within rfbC at 2107.992 kb on - strand, within rfbC at 2108.015 kb on - strand, within rfbC at 2108.016 kb on - strand, within rfbC at 2108.024 kb on - strand, within rfbC at 2108.027 kb on - strand, within rfbC at 2108.027 kb on - strand, within rfbC at 2108.128 kb on - strand at 2108.286 kb on - strand, within rfbA at 2108.286 kb on - strand, within rfbA at 2108.294 kb on - strand, within rfbA at 2108.300 kb on - strand, within rfbA at 2108.309 kb on - strand, within rfbA at 2108.309 kb on - strand, within rfbA at 2108.317 kb on - strand, within rfbA at 2108.317 kb on - strand, within rfbA at 2108.345 kb on - strand, within rfbA at 2108.345 kb on - strand, within rfbA at 2108.349 kb on - strand, within rfbA at 2108.349 kb on - strand, within rfbA at 2108.361 kb on - strand, within rfbA at 2108.361 kb on - strand, within rfbA at 2108.366 kb on - strand, within rfbA at 2108.366 kb on - strand, within rfbA at 2108.366 kb on - strand, within rfbA at 2108.383 kb on - strand, within rfbA at 2108.383 kb on - strand, within rfbA at 2108.383 kb on - strand, within rfbA at 2108.395 kb on - strand, within rfbA at 2108.395 kb on - strand, within rfbA at 2108.397 kb on - strand, within rfbA at 2108.397 kb on - strand, within rfbA at 2108.429 kb on - strand, within rfbA at 2108.459 kb on - strand, within rfbA at 2108.463 kb on - strand, within rfbA at 2108.478 kb on - strand, within rfbA at 2108.485 kb on - strand, within rfbA at 2108.494 kb on - strand, within rfbA at 2108.494 kb on - strand, within rfbA at 2108.521 kb on + strand, within rfbA at 2108.521 kb on - strand, within rfbA at 2108.529 kb on - strand, within rfbA at 2108.564 kb on - strand, within rfbA at 2108.564 kb on - strand, within rfbA at 2108.568 kb on - strand, within rfbA at 2108.604 kb on + strand, within rfbA at 2108.610 kb on - strand, within rfbA at 2108.612 kb on - strand, within rfbA at 2108.629 kb on - strand, within rfbA at 2108.641 kb on - strand, within rfbA at 2108.641 kb on - strand, within rfbA at 2108.682 kb on - strand, within rfbA at 2108.682 kb on - strand, within rfbA at 2108.682 kb on - strand, within rfbA at 2108.682 kb on - strand, within rfbA at 2108.718 kb on - strand, within rfbA at 2108.728 kb on - strand, within rfbA at 2108.728 kb on - strand, within rfbA at 2108.732 kb on + strand, within rfbA at 2108.734 kb on + strand, within rfbA at 2108.771 kb on - strand, within rfbA at 2108.790 kb on - strand, within rfbA at 2108.795 kb on - strand, within rfbA at 2108.807 kb on - strand, within rfbA at 2108.812 kb on + strand, within rfbA at 2108.814 kb on - strand, within rfbA at 2108.815 kb on - strand, within rfbA at 2108.815 kb on - strand, within rfbA at 2108.828 kb on - strand, within rfbA at 2108.828 kb on - strand, within rfbA at 2108.830 kb on - strand, within rfbA at 2108.832 kb on - strand, within rfbA at 2108.834 kb on - strand, within rfbA at 2108.835 kb on - strand, within rfbA at 2108.835 kb on - strand, within rfbA at 2108.835 kb on - strand, within rfbA at 2108.835 kb on - strand, within rfbA at 2108.835 kb on - strand, within rfbA at 2108.853 kb on - strand, within rfbA at 2108.864 kb on + strand, within rfbA at 2108.864 kb on + strand, within rfbA at 2108.864 kb on + strand, within rfbA at 2108.864 kb on + strand, within rfbA at 2108.870 kb on - strand, within rfbA at 2108.870 kb on - strand, within rfbA at 2108.874 kb on + strand, within rfbA at 2108.874 kb on + strand, within rfbA at 2108.913 kb on + strand, within rfbA at 2108.913 kb on + strand, within rfbA at 2108.922 kb on - strand, within rfbA at 2108.922 kb on - strand, within rfbA at 2108.924 kb on - strand, within rfbA at 2108.924 kb on - strand, within rfbA at 2108.926 kb on + strand, within rfbA at 2108.953 kb on - strand, within rfbA at 2108.956 kb on - strand at 2108.957 kb on - strand at 2108.973 kb on - strand at 2108.977 kb on - strand at 2108.977 kb on - strand at 2108.982 kb on - strand at 2108.982 kb on - strand at 2108.996 kb on - strand at 2108.996 kb on - strand at 2108.996 kb on - strand at 2108.996 kb on - strand at 2108.998 kb on - strand at 2109.009 kb on - strand at 2109.076 kb on - strand at 2109.148 kb on - strand at 2109.148 kb on - strand at 2109.148 kb on - strand at 2109.159 kb on - strand at 2109.159 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanol 0.08 vol% remove 2,106,612 - rfbX b2037 0.20 +1.7 2,106,642 - rfbX b2037 0.23 -0.5 2,106,642 - rfbX b2037 0.23 +2.3 2,106,673 - rfbX b2037 0.25 -1.1 2,106,673 - rfbX b2037 0.25 +0.8 2,106,674 - rfbX b2037 0.25 +0.1 2,106,674 - rfbX b2037 0.25 +3.0 2,106,674 - rfbX b2037 0.25 -2.5 2,106,674 - rfbX b2037 0.25 +3.6 2,106,674 - rfbX b2037 0.25 -1.0 2,106,674 - rfbX b2037 0.25 +1.8 2,106,726 - rfbX b2037 0.29 -3.2 2,106,760 - rfbX b2037 0.32 +1.7 2,106,764 - rfbX b2037 0.32 +2.5 2,106,769 - rfbX b2037 0.33 +0.6 2,106,771 - rfbX b2037 0.33 -0.5 2,106,771 - rfbX b2037 0.33 +1.1 2,106,784 - rfbX b2037 0.34 +0.5 2,106,817 - rfbX b2037 0.37 +3.1 2,106,817 - rfbX b2037 0.37 +1.4 2,106,848 - rfbX b2037 0.39 +0.1 2,106,862 - rfbX b2037 0.40 +3.2 2,106,862 - rfbX b2037 0.40 +1.3 2,106,988 - rfbX b2037 0.50 +1.6 2,106,989 - rfbX b2037 0.50 -2.9 2,106,989 - rfbX b2037 0.50 +2.4 2,107,009 - rfbX b2037 0.52 -2.8 2,107,009 - rfbX b2037 0.52 +2.1 2,107,142 - rfbX b2037 0.63 +1.3 2,107,155 - rfbX b2037 0.64 +1.3 2,107,198 - rfbX b2037 0.67 +0.7 2,107,211 - rfbX b2037 0.68 +2.1 2,107,222 - rfbX b2037 0.69 +1.6 2,107,249 - rfbX b2037 0.71 -0.4 2,107,257 - rfbX b2037 0.72 +2.8 2,107,314 - rfbX b2037 0.76 +2.6 2,107,314 - rfbX b2037 0.76 -0.4 2,107,319 - rfbX b2037 0.77 -0.2 2,107,400 - rfbX b2037 0.83 -0.5 2,107,455 - rfbX b2037 0.88 -0.3 2,107,458 - rfbX b2037 0.88 +1.6 2,107,460 - rfbX b2037 0.88 +2.0 2,107,505 - -1.5 2,107,505 - -1.4 2,107,519 - +1.1 2,107,530 - +1.3 2,107,530 - +0.2 2,107,574 - -0.5 2,107,574 - -3.4 2,107,574 - -2.3 2,107,575 - +1.0 2,107,575 - -0.1 2,107,577 - -0.4 2,107,624 - -1.9 2,107,632 - -2.2 2,107,632 - -0.8 2,107,633 - -2.5 2,107,634 - +0.9 2,107,649 - -2.7 2,107,649 - -0.4 2,107,692 - rfbC b2038 0.16 +0.2 2,107,692 - rfbC b2038 0.16 -2.8 2,107,717 - rfbC b2038 0.20 -1.1 2,107,725 - rfbC b2038 0.22 -0.7 2,107,801 - rfbC b2038 0.35 -0.1 2,107,801 - +0.5 2,107,804 - rfbC b2038 0.36 -4.5 2,107,811 - rfbC b2038 0.37 -3.6 2,107,825 + rfbC b2038 0.39 +1.6 2,107,935 - rfbC b2038 0.59 -2.2 2,107,938 - rfbC b2038 0.60 -1.9 2,107,938 - rfbC b2038 0.60 +1.0 2,107,940 - rfbC b2038 0.60 -1.2 2,107,946 - rfbC b2038 0.61 -1.8 2,107,946 - rfbC b2038 0.61 -3.6 2,107,948 - rfbC b2038 0.61 +0.6 2,107,948 - rfbC b2038 0.61 -2.8 2,107,953 - rfbC b2038 0.62 -1.8 2,107,977 - rfbC b2038 0.67 -3.0 2,107,992 - rfbC b2038 0.69 -2.0 2,108,015 - rfbC b2038 0.73 +0.4 2,108,016 - rfbC b2038 0.74 -1.0 2,108,024 - rfbC b2038 0.75 -3.4 2,108,027 - rfbC b2038 0.76 -1.0 2,108,027 - rfbC b2038 0.76 +0.6 2,108,128 - +0.1 2,108,286 - rfbA b2039 0.14 +3.5 2,108,286 - rfbA b2039 0.14 +2.5 2,108,294 - rfbA b2039 0.15 +3.7 2,108,300 - rfbA b2039 0.16 +2.9 2,108,309 - rfbA b2039 0.17 +2.3 2,108,309 - rfbA b2039 0.17 +2.5 2,108,317 - rfbA b2039 0.18 +3.2 2,108,317 - rfbA b2039 0.18 +3.4 2,108,345 - rfbA b2039 0.21 +0.8 2,108,345 - rfbA b2039 0.21 +3.2 2,108,349 - rfbA b2039 0.21 -0.5 2,108,349 - rfbA b2039 0.21 +2.2 2,108,361 - rfbA b2039 0.23 +1.4 2,108,361 - rfbA b2039 0.23 +2.4 2,108,366 - rfbA b2039 0.23 +1.7 2,108,366 - rfbA b2039 0.23 +4.1 2,108,366 - rfbA b2039 0.23 +2.3 2,108,383 - rfbA b2039 0.25 +2.6 2,108,383 - rfbA b2039 0.25 +1.2 2,108,383 - rfbA b2039 0.25 +1.5 2,108,395 - rfbA b2039 0.26 +2.0 2,108,395 - rfbA b2039 0.26 +2.3 2,108,397 - rfbA b2039 0.27 +2.7 2,108,397 - rfbA b2039 0.27 +3.2 2,108,429 - rfbA b2039 0.30 +2.0 2,108,459 - rfbA b2039 0.34 -0.9 2,108,463 - rfbA b2039 0.34 +2.0 2,108,478 - rfbA b2039 0.36 +1.8 2,108,485 - rfbA b2039 0.37 +1.4 2,108,494 - rfbA b2039 0.38 +2.7 2,108,494 - rfbA b2039 0.38 -0.9 2,108,521 + rfbA b2039 0.41 +1.5 2,108,521 - rfbA b2039 0.41 -0.7 2,108,529 - rfbA b2039 0.42 -0.9 2,108,564 - rfbA b2039 0.46 -0.8 2,108,564 - rfbA b2039 0.46 -0.5 2,108,568 - rfbA b2039 0.46 -2.2 2,108,604 + rfbA b2039 0.50 +0.9 2,108,610 - rfbA b2039 0.51 -1.0 2,108,612 - rfbA b2039 0.51 +3.1 2,108,629 - rfbA b2039 0.53 +4.1 2,108,641 - rfbA b2039 0.54 -0.1 2,108,641 - rfbA b2039 0.54 +2.5 2,108,682 - rfbA b2039 0.59 -0.7 2,108,682 - rfbA b2039 0.59 +1.9 2,108,682 - rfbA b2039 0.59 +2.8 2,108,682 - rfbA b2039 0.59 -0.1 2,108,718 - rfbA b2039 0.63 +3.4 2,108,728 - rfbA b2039 0.64 +3.8 2,108,728 - rfbA b2039 0.64 -0.1 2,108,732 + rfbA b2039 0.65 +1.5 2,108,734 + rfbA b2039 0.65 +0.9 2,108,771 - rfbA b2039 0.69 +1.0 2,108,790 - rfbA b2039 0.71 +1.9 2,108,795 - rfbA b2039 0.72 +2.8 2,108,807 - rfbA b2039 0.73 +2.7 2,108,812 + rfbA b2039 0.74 +2.2 2,108,814 - rfbA b2039 0.74 +0.5 2,108,815 - rfbA b2039 0.74 +3.3 2,108,815 - rfbA b2039 0.74 +0.8 2,108,828 - rfbA b2039 0.76 +1.0 2,108,828 - rfbA b2039 0.76 +3.3 2,108,830 - rfbA b2039 0.76 +2.3 2,108,832 - rfbA b2039 0.76 +2.1 2,108,834 - rfbA b2039 0.76 +1.2 2,108,835 - rfbA b2039 0.76 +1.8 2,108,835 - rfbA b2039 0.76 +2.7 2,108,835 - rfbA b2039 0.76 +2.3 2,108,835 - rfbA b2039 0.76 -0.9 2,108,835 - rfbA b2039 0.76 +3.3 2,108,853 - rfbA b2039 0.78 +2.3 2,108,864 + rfbA b2039 0.80 +2.8 2,108,864 + rfbA b2039 0.80 +1.6 2,108,864 + rfbA b2039 0.80 +2.2 2,108,864 + rfbA b2039 0.80 +1.7 2,108,870 - rfbA b2039 0.80 +1.6 2,108,870 - rfbA b2039 0.80 +2.7 2,108,874 + rfbA b2039 0.81 -1.6 2,108,874 + rfbA b2039 0.81 -2.2 2,108,913 + rfbA b2039 0.85 +2.5 2,108,913 + rfbA b2039 0.85 +2.5 2,108,922 - rfbA b2039 0.86 +2.5 2,108,922 - rfbA b2039 0.86 +1.2 2,108,924 - rfbA b2039 0.86 +0.8 2,108,924 - rfbA b2039 0.86 +2.7 2,108,926 + rfbA b2039 0.87 +2.8 2,108,953 - rfbA b2039 0.90 -0.3 2,108,956 - +1.5 2,108,957 - +3.0 2,108,973 - +3.6 2,108,977 - +4.5 2,108,977 - +2.7 2,108,982 - -1.5 2,108,982 - +1.4 2,108,996 - +3.8 2,108,996 - +2.1 2,108,996 - +2.9 2,108,996 - +2.4 2,108,998 - +2.1 2,109,009 - +2.5 2,109,076 - -2.7 2,109,148 - -1.5 2,109,148 - +2.0 2,109,148 - -0.2 2,109,159 - -1.2 2,109,159 - -1.6
Or see this region's nucleotide sequence