Strain Fitness in Escherichia coli BW25113 around b1835

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyebT and yebU are separated by 79 nucleotidesyebU and yebV are separated by 117 nucleotidesyebV and yebW are separated by 104 nucleotidesyebW and pphA are separated by 0 nucleotides b1834: yebT - orf, hypothetical protein (VIMSS), at 1,915,534 to 1,918,167 yebT b1835: yebU - putative nucleolar proteins (VIMSS), at 1,918,247 to 1,919,686 yebU b1836: yebV - orf, hypothetical protein (VIMSS), at 1,919,804 to 1,920,040 yebV b1837: yebW - orf, hypothetical protein (VIMSS), at 1,920,145 to 1,920,336 yebW b1838: pphA - protein phosphatase 1 modulates phosphoproteins, signals protein misfolding (VIMSS), at 1,920,337 to 1,920,993 pphA Position (kb) 1918 1919 1920Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1917.326 kb on - strand, within yebTat 1917.326 kb on - strand, within yebTat 1917.618 kb on + strand, within yebTat 1917.625 kb on + strand, within yebTat 1917.757 kb on - strand, within yebTat 1917.757 kb on - strand, within yebTat 1917.829 kb on + strand, within yebTat 1917.829 kb on + strand, within yebTat 1917.884 kb on + strand, within yebTat 1917.937 kb on + strandat 1917.984 kb on - strandat 1918.087 kb on + strandat 1918.174 kb on + strandat 1918.237 kb on + strandat 1918.316 kb on - strandat 1918.509 kb on + strand, within yebUat 1918.509 kb on + strand, within yebUat 1919.038 kb on - strand, within yebUat 1919.085 kb on - strand, within yebUat 1919.085 kb on - strand, within yebUat 1919.333 kb on + strand, within yebUat 1919.580 kb on - strandat 1919.818 kb on + strandat 1919.871 kb on + strand, within yebVat 1919.929 kb on + strand, within yebVat 1919.929 kb on + strand, within yebVat 1920.220 kb on + strand, within yebWat 1920.220 kb on + strand, within yebWat 1920.256 kb on - strand, within yebWat 1920.256 kb on - strand, within yebWat 1920.373 kb on - strandat 1920.389 kb on + strandat 1920.429 kb on + strand, within pphAat 1920.448 kb on - strand, within pphAat 1920.474 kb on + strand, within pphAat 1920.510 kb on - strand, within pphAat 1920.510 kb on - strand, within pphA

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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1,917,326 - yebT b1834 0.68 -2.1
1,917,326 - yebT b1834 0.68 -2.1
1,917,618 + yebT b1834 0.79 -0.5
1,917,625 + yebT b1834 0.79 -3.0
1,917,757 - yebT b1834 0.84 +1.6
1,917,757 - yebT b1834 0.84 -0.2
1,917,829 + yebT b1834 0.87 -1.1
1,917,829 + yebT b1834 0.87 -3.1
1,917,884 + yebT b1834 0.89 -1.8
1,917,937 + +0.4
1,917,984 - -3.0
1,918,087 + -2.1
1,918,174 + -2.9
1,918,237 + +1.0
1,918,316 - -0.1
1,918,509 + yebU b1835 0.18 +2.0
1,918,509 + yebU b1835 0.18 +2.4
1,919,038 - yebU b1835 0.55 +1.1
1,919,085 - yebU b1835 0.58 -0.8
1,919,085 - yebU b1835 0.58 +1.2
1,919,333 + yebU b1835 0.75 +0.4
1,919,580 - +1.8
1,919,818 + -2.2
1,919,871 + yebV b1836 0.28 +0.9
1,919,929 + yebV b1836 0.53 -0.8
1,919,929 + yebV b1836 0.53 -0.2
1,920,220 + yebW b1837 0.39 -1.3
1,920,220 + yebW b1837 0.39 +0.9
1,920,256 - yebW b1837 0.58 -0.2
1,920,256 - yebW b1837 0.58 -2.1
1,920,373 - +0.8
1,920,389 + +0.9
1,920,429 + pphA b1838 0.14 -2.0
1,920,448 - pphA b1838 0.17 +1.7
1,920,474 + pphA b1838 0.21 +0.7
1,920,510 - pphA b1838 0.26 +1.0
1,920,510 - pphA b1838 0.26 -1.3

Or see this region's nucleotide sequence