Strain Fitness in Escherichia coli BW25113 around b1813

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpabB and yeaB are separated by 3 nucleotidesyeaB and sdaA are separated by 183 nucleotides b1812: pabB - para-aminobenzoate synthase component I (NCBI), at 1,892,829 to 1,894,190 pabB b1813: yeaB - predicted NUDIX hydrolase (NCBI), at 1,894,194 to 1,894,772 yeaB b1814: sdaA - L-serine deaminase I (NCBI), at 1,894,956 to 1,896,320 sdaA Position (kb) 1894 1895Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1893.663 kb on + strand, within pabBat 1893.663 kb on - strand, within pabBat 1893.819 kb on + strand, within pabBat 1893.819 kb on + strand, within pabBat 1893.960 kb on - strand, within pabBat 1893.960 kb on - strand, within pabBat 1894.035 kb on + strand, within pabBat 1894.301 kb on - strand, within yeaBat 1894.400 kb on + strand, within yeaBat 1894.406 kb on - strand, within yeaBat 1894.419 kb on + strand, within yeaBat 1894.446 kb on + strand, within yeaBat 1894.456 kb on + strand, within yeaBat 1894.500 kb on + strand, within yeaBat 1894.500 kb on + strand, within yeaBat 1894.551 kb on - strand, within yeaBat 1894.579 kb on - strand, within yeaBat 1894.629 kb on - strand, within yeaBat 1894.683 kb on + strand, within yeaBat 1894.683 kb on + strand, within yeaBat 1894.686 kb on - strand, within yeaBat 1894.693 kb on + strand, within yeaBat 1894.693 kb on + strand, within yeaBat 1894.735 kb on + strandat 1894.766 kb on + strandat 1894.766 kb on + strandat 1894.804 kb on + strandat 1894.875 kb on - strandat 1894.875 kb on - strandat 1894.890 kb on + strandat 1894.890 kb on + strandat 1894.915 kb on - strandat 1894.961 kb on - strandat 1894.997 kb on + strandat 1895.002 kb on - strandat 1895.028 kb on - strandat 1895.028 kb on - strandat 1895.039 kb on - strandat 1895.039 kb on - strandat 1895.465 kb on + strand, within sdaAat 1895.498 kb on - strand, within sdaAat 1895.540 kb on - strand, within sdaAat 1895.646 kb on - strand, within sdaAat 1895.646 kb on - strand, within sdaA

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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1,893,663 + pabB b1812 0.61 -2.5
1,893,663 - pabB b1812 0.61 +1.2
1,893,819 + pabB b1812 0.73 +1.4
1,893,819 + pabB b1812 0.73 +0.4
1,893,960 - pabB b1812 0.83 -1.8
1,893,960 - pabB b1812 0.83 +1.4
1,894,035 + pabB b1812 0.89 +1.6
1,894,301 - yeaB b1813 0.18 -2.8
1,894,400 + yeaB b1813 0.36 -2.1
1,894,406 - yeaB b1813 0.37 -1.5
1,894,419 + yeaB b1813 0.39 +0.5
1,894,446 + yeaB b1813 0.44 +2.0
1,894,456 + yeaB b1813 0.45 -2.0
1,894,500 + yeaB b1813 0.53 -2.8
1,894,500 + yeaB b1813 0.53 -2.3
1,894,551 - yeaB b1813 0.62 -3.3
1,894,579 - yeaB b1813 0.66 -3.5
1,894,629 - yeaB b1813 0.75 +1.1
1,894,683 + yeaB b1813 0.84 +1.6
1,894,683 + yeaB b1813 0.84 +0.5
1,894,686 - yeaB b1813 0.85 +0.0
1,894,693 + yeaB b1813 0.86 +2.8
1,894,693 + yeaB b1813 0.86 -1.9
1,894,735 + -0.1
1,894,766 + -0.8
1,894,766 + +2.0
1,894,804 + +0.5
1,894,875 - -1.1
1,894,875 - +1.7
1,894,890 + +0.7
1,894,890 + +1.1
1,894,915 - +0.1
1,894,961 - +1.7
1,894,997 + +1.3
1,895,002 - +2.0
1,895,028 - -2.5
1,895,028 - +1.5
1,895,039 - +1.1
1,895,039 - -2.1
1,895,465 + sdaA b1814 0.37 +1.7
1,895,498 - sdaA b1814 0.40 +3.6
1,895,540 - sdaA b1814 0.43 -0.3
1,895,646 - sdaA b1814 0.51 -1.3
1,895,646 - sdaA b1814 0.51 +2.3

Or see this region's nucleotide sequence