Strain Fitness in Escherichia coli BW25113 around b1684

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynhE and sufA are separated by 8 nucleotidessufA and rydB are separated by 326 nucleotidesrydB and ydiH are separated by 153 nucleotidesydiH and ydiI are separated by 99 nucleotides b1683: ynhE - orf, hypothetical protein (VIMSS), at 1,760,546 to 1,762,033 ynhE b1684: sufA - iron-sulfur cluster assembly scaffold protein (NCBI), at 1,762,042 to 1,762,410 sufA b4430: rydB - regulatory sRNA (NCBI), at 1,762,737 to 1,762,804 rydB b1685: ydiH - predicted protein (RefSeq), at 1,762,958 to 1,763,146 ydiH b1686: ydiI - hypothetical protein (NCBI), at 1,763,246 to 1,763,656 ydiI Position (kb) 1762 1763Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1761.252 kb on - strand, within ynhEat 1761.371 kb on + strand, within ynhEat 1761.462 kb on + strand, within ynhEat 1761.662 kb on - strand, within ynhEat 1761.706 kb on - strand, within ynhEat 1761.706 kb on - strand, within ynhEat 1761.706 kb on - strand, within ynhEat 1761.721 kb on - strand, within ynhEat 1761.721 kb on - strand, within ynhEat 1761.867 kb on + strand, within ynhEat 1761.868 kb on - strand, within ynhEat 1762.235 kb on - strand, within sufAat 1762.235 kb on - strand, within sufAat 1762.245 kb on - strand, within sufAat 1762.437 kb on + strandat 1762.521 kb on + strandat 1762.546 kb on - strandat 1762.891 kb on - strandat 1762.891 kb on - strandat 1762.904 kb on - strandat 1763.084 kb on - strand, within ydiHat 1763.150 kb on - strandat 1763.150 kb on - strandat 1763.186 kb on - strandat 1763.195 kb on + strandat 1763.195 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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1,761,252 - ynhE b1683 0.47 +2.4
1,761,371 + ynhE b1683 0.55 +2.5
1,761,462 + ynhE b1683 0.62 +1.7
1,761,662 - ynhE b1683 0.75 +0.1
1,761,706 - ynhE b1683 0.78 +0.4
1,761,706 - ynhE b1683 0.78 -0.7
1,761,706 - ynhE b1683 0.78 -3.2
1,761,721 - ynhE b1683 0.79 +2.3
1,761,721 - ynhE b1683 0.79 +1.0
1,761,867 + ynhE b1683 0.89 -3.2
1,761,868 - ynhE b1683 0.89 -1.8
1,762,235 - sufA b1684 0.52 -3.3
1,762,235 - sufA b1684 0.52 -0.7
1,762,245 - sufA b1684 0.55 -3.0
1,762,437 + +0.2
1,762,521 + +0.5
1,762,546 - +0.8
1,762,891 - +1.4
1,762,891 - +3.3
1,762,904 - -1.3
1,763,084 - ydiH b1685 0.67 +1.8
1,763,150 - +1.6
1,763,150 - +0.8
1,763,186 - -1.5
1,763,195 + +1.3
1,763,195 + +2.7

Or see this region's nucleotide sequence