Strain Fitness in Escherichia coli BW25113 around b1682

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsufD and sufC overlap by 26 nucleotidessufC and ynhE are separated by 9 nucleotides b1681: sufD - component of SufBCD complex (NCBI), at 1,758,544 to 1,759,815 sufD b1682: sufC - cysteine desulfurase ATPase component (NCBI), at 1,759,790 to 1,760,536 sufC b1683: ynhE - orf, hypothetical protein (VIMSS), at 1,760,546 to 1,762,033 ynhE Position (kb) 1759 1760 1761Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1758.821 kb on - strand, within sufDat 1759.046 kb on - strand, within sufDat 1759.046 kb on - strand, within sufDat 1759.054 kb on + strand, within sufDat 1759.134 kb on + strand, within sufDat 1759.288 kb on + strand, within sufDat 1759.296 kb on - strand, within sufDat 1759.345 kb on - strand, within sufDat 1759.576 kb on - strand, within sufDat 1759.578 kb on - strand, within sufDat 1759.578 kb on - strand, within sufDat 1759.590 kb on - strand, within sufDat 1759.590 kb on - strand, within sufDat 1759.624 kb on + strand, within sufDat 1759.624 kb on + strand, within sufDat 1759.806 kb on - strandat 1759.806 kb on - strandat 1759.812 kb on + strandat 1759.812 kb on + strandat 1759.877 kb on + strand, within sufCat 1759.902 kb on - strand, within sufCat 1759.902 kb on - strand, within sufCat 1759.907 kb on - strand, within sufCat 1759.944 kb on + strand, within sufCat 1759.944 kb on + strand, within sufCat 1759.999 kb on + strand, within sufCat 1760.009 kb on - strand, within sufCat 1760.777 kb on - strand, within ynhEat 1760.788 kb on - strand, within ynhEat 1760.968 kb on - strand, within ynhEat 1760.968 kb on - strand, within ynhEat 1761.252 kb on - strand, within ynhEat 1761.371 kb on + strand, within ynhEat 1761.462 kb on + strand, within ynhE

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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1,758,821 - sufD b1681 0.22 +0.0
1,759,046 - sufD b1681 0.39 -0.5
1,759,046 - sufD b1681 0.39 -1.1
1,759,054 + sufD b1681 0.40 +0.7
1,759,134 + sufD b1681 0.46 -0.2
1,759,288 + sufD b1681 0.58 -0.1
1,759,296 - sufD b1681 0.59 +1.7
1,759,345 - sufD b1681 0.63 -0.1
1,759,576 - sufD b1681 0.81 +1.2
1,759,578 - sufD b1681 0.81 -2.5
1,759,578 - sufD b1681 0.81 +2.9
1,759,590 - sufD b1681 0.82 +0.1
1,759,590 - sufD b1681 0.82 -2.1
1,759,624 + sufD b1681 0.85 +0.1
1,759,624 + sufD b1681 0.85 +2.4
1,759,806 - +1.2
1,759,806 - -2.5
1,759,812 + -1.7
1,759,812 + -1.6
1,759,877 + sufC b1682 0.12 +0.3
1,759,902 - sufC b1682 0.15 +1.6
1,759,902 - sufC b1682 0.15 -3.4
1,759,907 - sufC b1682 0.16 -0.4
1,759,944 + sufC b1682 0.21 +0.9
1,759,944 + sufC b1682 0.21 +2.6
1,759,999 + sufC b1682 0.28 +1.0
1,760,009 - sufC b1682 0.29 -0.0
1,760,777 - ynhE b1683 0.16 +0.2
1,760,788 - ynhE b1683 0.16 -0.1
1,760,968 - ynhE b1683 0.28 +1.4
1,760,968 - ynhE b1683 0.28 +0.8
1,761,252 - ynhE b1683 0.47 +2.4
1,761,371 + ynhE b1683 0.55 +2.5
1,761,462 + ynhE b1683 0.62 +1.7

Or see this region's nucleotide sequence