Strain Fitness in Escherichia coli BW25113 around b1525

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyneG and yneH overlap by 1 nucleotidesyneH and b1525 are separated by 63 nucleotidesb1525 and yneJ are separated by 100 nucleotides b1523: yneG - hypothetical protein (NCBI), at 1,609,990 to 1,610,349 yneG b1524: yneH - predicted glutaminase (NCBI), at 1,610,349 to 1,611,275 yneH b1525: b1525 - putative aldehyde dehydrogenase (VIMSS), at 1,611,339 to 1,612,727 b1525 b1526: yneJ - predicted DNA-binding transcriptional regulator (NCBI), at 1,612,828 to 1,613,709 yneJ Position (kb) 1611 1612 1613Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1610.422 kb on - strandat 1610.543 kb on + strand, within yneHat 1611.288 kb on + strandat 1611.747 kb on - strand, within b1525at 1611.781 kb on - strand, within b1525at 1611.925 kb on - strand, within b1525at 1612.020 kb on + strand, within b1525at 1612.066 kb on - strand, within b1525at 1612.177 kb on - strand, within b1525at 1612.217 kb on + strand, within b1525at 1612.225 kb on - strand, within b1525at 1612.359 kb on + strand, within b1525at 1612.361 kb on + strand, within b1525at 1612.776 kb on - strandat 1612.999 kb on + strand, within yneJat 1612.999 kb on + strand, within yneJat 1613.337 kb on - strand, within yneJat 1613.373 kb on + strand, within yneJat 1613.444 kb on + strand, within yneJat 1613.563 kb on + strand, within yneJat 1613.695 kb on - strandat 1613.695 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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1,610,422 - -0.5
1,610,543 + yneH b1524 0.21 -3.6
1,611,288 + +1.2
1,611,747 - b1525 b1525 0.29 -3.5
1,611,781 - b1525 b1525 0.32 -1.3
1,611,925 - b1525 b1525 0.42 +0.5
1,612,020 + b1525 b1525 0.49 +1.3
1,612,066 - b1525 b1525 0.52 -3.8
1,612,177 - b1525 b1525 0.60 +1.5
1,612,217 + b1525 b1525 0.63 +1.6
1,612,225 - b1525 b1525 0.64 +0.7
1,612,359 + b1525 b1525 0.73 -0.2
1,612,361 + b1525 b1525 0.74 -1.6
1,612,776 - +1.3
1,612,999 + yneJ b1526 0.19 -0.8
1,612,999 + yneJ b1526 0.19 -0.8
1,613,337 - yneJ b1526 0.58 -1.4
1,613,373 + yneJ b1526 0.62 +0.1
1,613,444 + yneJ b1526 0.70 -2.1
1,613,563 + yneJ b1526 0.83 +1.9
1,613,695 - +2.1
1,613,695 - +0.7

Or see this region's nucleotide sequence