Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynaE and ttcC are separated by 733 nucleotides ttcC and ynaF are separated by 176 nucleotides ynaF and ompN are separated by 140 nucleotides
b1375: ynaE - cold shock protein, function unknown, Rac prophage (NCBI), at 1,432,015 to 1,432,248
ynaE
b4638: ttcC - no description, at 1,432,982 to 1,433,032
ttcC
b1376: ynaF - putative filament protein (VIMSS), at 1,433,209 to 1,433,643
ynaF
b1377: ompN - outer membrane pore protein N, non-specific (NCBI), at 1,433,784 to 1,434,917
ompN
Position (kb)
1433
1434 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1432.423 kb on - strand at 1432.736 kb on + strand at 1432.792 kb on + strand at 1433.065 kb on + strand at 1433.079 kb on + strand at 1433.079 kb on + strand at 1433.135 kb on - strand at 1433.137 kb on + strand at 1433.225 kb on + strand at 1433.232 kb on + strand at 1433.232 kb on + strand at 1433.355 kb on + strand, within ynaF at 1433.360 kb on + strand, within ynaF at 1433.375 kb on + strand, within ynaF at 1433.381 kb on - strand, within ynaF at 1433.475 kb on - strand, within ynaF at 1433.475 kb on - strand, within ynaF at 1433.501 kb on + strand, within ynaF at 1433.501 kb on + strand, within ynaF at 1433.507 kb on - strand, within ynaF at 1433.509 kb on - strand, within ynaF at 1433.519 kb on + strand, within ynaF at 1433.567 kb on + strand, within ynaF at 1433.683 kb on + strand at 1433.700 kb on - strand at 1433.700 kb on - strand at 1433.792 kb on + strand at 1433.832 kb on - strand at 1433.842 kb on + strand at 1433.850 kb on - strand at 1433.883 kb on - strand at 1433.962 kb on + strand, within ompN at 1433.973 kb on + strand, within ompN at 1433.973 kb on - strand, within ompN at 1433.976 kb on + strand, within ompN at 1433.983 kb on - strand, within ompN at 1433.985 kb on + strand, within ompN at 1433.985 kb on + strand, within ompN at 1434.070 kb on - strand, within ompN at 1434.070 kb on - strand, within ompN at 1434.119 kb on - strand, within ompN at 1434.119 kb on - strand, within ompN at 1434.201 kb on - strand, within ompN at 1434.201 kb on - strand, within ompN at 1434.295 kb on + strand, within ompN at 1434.347 kb on - strand, within ompN at 1434.357 kb on - strand, within ompN at 1434.397 kb on + strand, within ompN at 1434.523 kb on + strand, within ompN at 1434.523 kb on + strand, within ompN at 1434.570 kb on + strand, within ompN at 1434.633 kb on + strand, within ompN
Per-strain Table
Position Strand Gene LocusTag Fraction octanol 0.08 vol% remove 1,432,423 - -0.1 1,432,736 + +1.9 1,432,792 + -3.3 1,433,065 + +0.6 1,433,079 + -2.1 1,433,079 + -0.8 1,433,135 - +0.7 1,433,137 + -3.9 1,433,225 + -0.7 1,433,232 + +0.6 1,433,232 + +2.2 1,433,355 + ynaF b1376 0.34 -4.2 1,433,360 + ynaF b1376 0.35 +0.9 1,433,375 + ynaF b1376 0.38 +1.4 1,433,381 - ynaF b1376 0.40 -1.6 1,433,475 - ynaF b1376 0.61 -3.2 1,433,475 - ynaF b1376 0.61 +3.2 1,433,501 + ynaF b1376 0.67 +0.9 1,433,501 + ynaF b1376 0.67 +2.3 1,433,507 - ynaF b1376 0.69 -2.1 1,433,509 - ynaF b1376 0.69 -0.3 1,433,519 + ynaF b1376 0.71 +0.5 1,433,567 + ynaF b1376 0.82 +2.1 1,433,683 + +2.8 1,433,700 - -0.6 1,433,700 - -0.8 1,433,792 + -0.9 1,433,832 - +1.6 1,433,842 + -2.7 1,433,850 - +1.0 1,433,883 - -0.1 1,433,962 + ompN b1377 0.16 +2.0 1,433,973 + ompN b1377 0.17 +0.8 1,433,973 - ompN b1377 0.17 +1.0 1,433,976 + ompN b1377 0.17 +0.5 1,433,983 - ompN b1377 0.18 +0.9 1,433,985 + ompN b1377 0.18 +2.1 1,433,985 + ompN b1377 0.18 +0.1 1,434,070 - ompN b1377 0.25 -3.0 1,434,070 - ompN b1377 0.25 -1.2 1,434,119 - ompN b1377 0.30 -1.8 1,434,119 - ompN b1377 0.30 +2.5 1,434,201 - ompN b1377 0.37 +0.5 1,434,201 - ompN b1377 0.37 +0.8 1,434,295 + ompN b1377 0.45 +0.6 1,434,347 - ompN b1377 0.50 -0.7 1,434,357 - ompN b1377 0.51 -0.8 1,434,397 + ompN b1377 0.54 +1.1 1,434,523 + ompN b1377 0.65 -1.5 1,434,523 + ompN b1377 0.65 -0.9 1,434,570 + ompN b1377 0.69 -0.3 1,434,633 + ompN b1377 0.75 -0.8
Or see this region's nucleotide sequence