Strain Fitness in Escherichia coli BW25113 around b1295

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsapA and ymjA are separated by 312 nucleotidesymjA and ycjJ are separated by 133 nucleotides b1294: sapA - predicted antimicrobial peptide transporter subunit (NCBI), at 1,353,491 to 1,355,134 sapA b1295: ymjA - hypothetical protein (NCBI), at 1,355,447 to 1,355,692 ymjA b1296: ycjJ - putative amino acid/amine transport protein (VIMSS), at 1,355,826 to 1,357,211 ycjJ Position (kb) 1355 1356Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1354.486 kb on - strand, within sapAat 1354.486 kb on - strand, within sapAat 1354.640 kb on + strand, within sapAat 1354.789 kb on - strand, within sapAat 1354.915 kb on - strand, within sapAat 1354.915 kb on - strand, within sapAat 1354.998 kb on - strandat 1355.215 kb on + strandat 1355.225 kb on - strandat 1355.225 kb on - strandat 1355.370 kb on - strandat 1355.370 kb on - strandat 1355.445 kb on - strandat 1355.485 kb on + strand, within ymjAat 1355.488 kb on - strand, within ymjAat 1355.488 kb on - strand, within ymjAat 1355.507 kb on - strand, within ymjAat 1355.713 kb on - strandat 1355.723 kb on - strandat 1355.726 kb on - strandat 1355.728 kb on - strandat 1355.853 kb on - strandat 1355.862 kb on + strandat 1356.256 kb on + strand, within ycjJ

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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1,354,486 - sapA b1294 0.61 +0.8
1,354,486 - sapA b1294 0.61 -0.0
1,354,640 + sapA b1294 0.70 -1.2
1,354,789 - sapA b1294 0.79 -0.7
1,354,915 - sapA b1294 0.87 -2.2
1,354,915 - sapA b1294 0.87 +1.3
1,354,998 - -0.1
1,355,215 + +1.1
1,355,225 - -0.3
1,355,225 - +1.6
1,355,370 - +0.4
1,355,370 - -1.0
1,355,445 - +0.0
1,355,485 + ymjA b1295 0.15 -0.5
1,355,488 - ymjA b1295 0.17 -1.2
1,355,488 - ymjA b1295 0.17 -0.5
1,355,507 - ymjA b1295 0.24 -1.2
1,355,713 - -0.8
1,355,723 - +1.6
1,355,726 - -1.7
1,355,728 - +3.0
1,355,853 - -0.9
1,355,862 + -3.0
1,356,256 + ycjJ b1296 0.31 -1.2

Or see this region's nucleotide sequence