Strain Fitness in Escherichia coli BW25113 around b1224

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnarK and narG are separated by 515 nucleotidesnarG and narH overlap by 4 nucleotides b1223: narK - nitrate/nitrite transporter (NCBI), at 1,277,180 to 1,278,571 narK b1224: narG - nitrate reductase 1, alpha subunit (NCBI), at 1,279,087 to 1,282,830 narG b1225: narH - nitrate reductase 1, beta (Fe-S) subunit (NCBI), at 1,282,827 to 1,284,365 narH Position (kb) 1279 1280 1281 1282 1283Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1278.184 kb on + strand, within narKat 1278.305 kb on - strand, within narKat 1278.309 kb on + strand, within narKat 1278.535 kb on + strandat 1278.535 kb on + strandat 1278.545 kb on + strandat 1278.545 kb on + strandat 1278.545 kb on + strandat 1278.545 kb on + strandat 1278.593 kb on + strandat 1278.646 kb on + strandat 1278.648 kb on + strandat 1278.648 kb on + strandat 1278.674 kb on + strandat 1278.674 kb on + strandat 1278.686 kb on + strandat 1278.686 kb on + strandat 1278.817 kb on - strandat 1278.845 kb on - strandat 1278.947 kb on - strandat 1279.014 kb on + strandat 1279.014 kb on + strandat 1279.022 kb on - strandat 1279.032 kb on + strandat 1279.032 kb on + strandat 1279.059 kb on + strandat 1279.169 kb on - strandat 1279.194 kb on + strandat 1279.373 kb on + strandat 1279.502 kb on - strand, within narGat 1279.616 kb on - strand, within narGat 1279.640 kb on + strand, within narGat 1279.846 kb on + strand, within narGat 1279.846 kb on + strand, within narGat 1279.986 kb on + strand, within narGat 1279.986 kb on + strand, within narGat 1280.077 kb on + strand, within narGat 1280.130 kb on + strand, within narGat 1280.170 kb on - strand, within narGat 1280.359 kb on + strand, within narGat 1280.473 kb on - strand, within narGat 1280.473 kb on - strand, within narGat 1280.489 kb on - strand, within narGat 1280.489 kb on - strand, within narGat 1280.523 kb on + strand, within narGat 1280.523 kb on + strand, within narGat 1280.800 kb on + strand, within narGat 1280.819 kb on + strand, within narGat 1280.819 kb on + strand, within narGat 1280.928 kb on + strand, within narGat 1281.059 kb on + strand, within narGat 1281.077 kb on - strand, within narGat 1281.090 kb on - strand, within narGat 1281.142 kb on - strand, within narGat 1281.227 kb on + strand, within narGat 1281.754 kb on - strand, within narGat 1281.799 kb on - strand, within narGat 1281.833 kb on + strand, within narGat 1281.833 kb on + strand, within narGat 1281.870 kb on + strand, within narGat 1281.881 kb on + strand, within narGat 1281.881 kb on + strand, within narGat 1282.127 kb on - strand, within narGat 1282.221 kb on + strand, within narGat 1282.221 kb on + strand, within narGat 1282.634 kb on - strandat 1282.810 kb on + strandat 1282.810 kb on + strandat 1282.856 kb on + strandat 1282.954 kb on - strandat 1282.954 kb on - strandat 1283.081 kb on + strand, within narHat 1283.279 kb on + strand, within narHat 1283.638 kb on + strand, within narHat 1283.650 kb on - strand, within narHat 1283.650 kb on - strand, within narH

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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1,278,184 + narK b1223 0.72 +2.9
1,278,305 - narK b1223 0.81 +1.1
1,278,309 + narK b1223 0.81 +1.4
1,278,535 + +2.2
1,278,535 + +1.2
1,278,545 + -1.5
1,278,545 + -0.1
1,278,545 + -3.4
1,278,545 + -1.0
1,278,593 + +3.0
1,278,646 + +0.1
1,278,648 + +2.4
1,278,648 + -2.3
1,278,674 + +1.0
1,278,674 + +3.0
1,278,686 + -0.7
1,278,686 + +1.4
1,278,817 - +0.0
1,278,845 - +1.7
1,278,947 - +0.2
1,279,014 + -1.1
1,279,014 + +0.6
1,279,022 - -0.7
1,279,032 + +2.7
1,279,032 + -2.1
1,279,059 + -0.4
1,279,169 - +1.1
1,279,194 + -0.4
1,279,373 + -1.7
1,279,502 - narG b1224 0.11 -2.4
1,279,616 - narG b1224 0.14 +1.8
1,279,640 + narG b1224 0.15 -0.1
1,279,846 + narG b1224 0.20 -2.4
1,279,846 + narG b1224 0.20 +1.7
1,279,986 + narG b1224 0.24 +1.2
1,279,986 + narG b1224 0.24 +1.0
1,280,077 + narG b1224 0.26 -0.5
1,280,130 + narG b1224 0.28 -1.6
1,280,170 - narG b1224 0.29 +0.9
1,280,359 + narG b1224 0.34 -0.4
1,280,473 - narG b1224 0.37 +2.0
1,280,473 - narG b1224 0.37 +0.0
1,280,489 - narG b1224 0.37 +2.9
1,280,489 - narG b1224 0.37 +1.1
1,280,523 + narG b1224 0.38 -0.4
1,280,523 + narG b1224 0.38 -0.4
1,280,800 + narG b1224 0.46 +2.3
1,280,819 + narG b1224 0.46 -0.4
1,280,819 + narG b1224 0.46 +1.3
1,280,928 + narG b1224 0.49 +0.8
1,281,059 + narG b1224 0.53 +2.1
1,281,077 - narG b1224 0.53 -1.1
1,281,090 - narG b1224 0.53 -0.4
1,281,142 - narG b1224 0.55 -1.1
1,281,227 + narG b1224 0.57 +0.0
1,281,754 - narG b1224 0.71 -2.9
1,281,799 - narG b1224 0.72 +0.9
1,281,833 + narG b1224 0.73 +1.8
1,281,833 + narG b1224 0.73 +0.1
1,281,870 + narG b1224 0.74 -0.9
1,281,881 + narG b1224 0.75 -0.9
1,281,881 + narG b1224 0.75 +3.6
1,282,127 - narG b1224 0.81 -0.5
1,282,221 + narG b1224 0.84 -0.8
1,282,221 + narG b1224 0.84 +0.8
1,282,634 - +0.6
1,282,810 + +0.3
1,282,810 + +0.6
1,282,856 + +1.3
1,282,954 - -2.0
1,282,954 - +1.0
1,283,081 + narH b1225 0.17 +1.0
1,283,279 + narH b1225 0.29 +2.1
1,283,638 + narH b1225 0.53 +0.4
1,283,650 - narH b1225 0.53 +1.2
1,283,650 - narH b1225 0.53 +0.1

Or see this region's nucleotide sequence