Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phoQ and phoP overlap by 1 nucleotides phoP and purB are separated by 168 nucleotides
b1129: phoQ - sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI), at 1,187,539 to 1,188,999
phoQ
b1130: phoP - DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI), at 1,188,999 to 1,189,670
phoP
b1131: purB - adenylosuccinate lyase (NCBI), at 1,189,839 to 1,191,209
purB
Position (kb)
1188
1189
1190 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1188.100 kb on - strand, within phoQ at 1188.191 kb on + strand, within phoQ at 1188.246 kb on + strand, within phoQ at 1188.320 kb on + strand, within phoQ at 1188.342 kb on + strand, within phoQ at 1188.342 kb on + strand, within phoQ at 1188.435 kb on - strand, within phoQ at 1188.435 kb on - strand, within phoQ at 1188.461 kb on + strand, within phoQ at 1188.564 kb on + strand, within phoQ at 1188.760 kb on - strand, within phoQ at 1188.760 kb on - strand, within phoQ at 1188.911 kb on + strand at 1188.924 kb on + strand at 1189.023 kb on - strand at 1189.104 kb on + strand, within phoP at 1189.121 kb on + strand, within phoP at 1189.135 kb on - strand, within phoP at 1189.135 kb on - strand, within phoP at 1189.137 kb on + strand, within phoP at 1189.137 kb on + strand, within phoP at 1189.137 kb on + strand, within phoP at 1189.320 kb on - strand, within phoP at 1189.320 kb on - strand, within phoP at 1189.330 kb on - strand, within phoP at 1189.375 kb on - strand, within phoP at 1189.375 kb on - strand, within phoP at 1189.395 kb on + strand, within phoP at 1189.403 kb on - strand, within phoP at 1189.483 kb on + strand, within phoP at 1189.587 kb on + strand, within phoP at 1189.587 kb on + strand, within phoP at 1189.590 kb on + strand, within phoP at 1189.614 kb on - strand at 1189.713 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanol 0.08 vol% remove 1,188,100 - phoQ b1129 0.38 -2.6 1,188,191 + phoQ b1129 0.45 -2.7 1,188,246 + phoQ b1129 0.48 -3.1 1,188,320 + phoQ b1129 0.53 -5.4 1,188,342 + phoQ b1129 0.55 -2.7 1,188,342 + phoQ b1129 0.55 -4.3 1,188,435 - phoQ b1129 0.61 -2.2 1,188,435 - phoQ b1129 0.61 -2.4 1,188,461 + phoQ b1129 0.63 -3.3 1,188,564 + phoQ b1129 0.70 -2.2 1,188,760 - phoQ b1129 0.84 -1.9 1,188,760 - phoQ b1129 0.84 -1.4 1,188,911 + -1.3 1,188,924 + -2.4 1,189,023 - -3.4 1,189,104 + phoP b1130 0.16 -3.3 1,189,121 + phoP b1130 0.18 -3.2 1,189,135 - phoP b1130 0.20 -4.2 1,189,135 - phoP b1130 0.20 -2.8 1,189,137 + phoP b1130 0.21 -3.9 1,189,137 + phoP b1130 0.21 -3.7 1,189,137 + phoP b1130 0.21 -2.7 1,189,320 - phoP b1130 0.48 -3.2 1,189,320 - phoP b1130 0.48 -3.2 1,189,330 - phoP b1130 0.49 -2.9 1,189,375 - phoP b1130 0.56 -1.3 1,189,375 - phoP b1130 0.56 -1.6 1,189,395 + phoP b1130 0.59 -3.5 1,189,403 - phoP b1130 0.60 -1.1 1,189,483 + phoP b1130 0.72 -3.1 1,189,587 + phoP b1130 0.88 -2.4 1,189,587 + phoP b1130 0.88 -3.0 1,189,590 + phoP b1130 0.88 -3.6 1,189,614 - -3.1 1,189,713 + -3.2
Or see this region's nucleotide sequence