Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycfM and ycfN overlap by 20 nucleotides ycfN and nagZ are separated by 10 nucleotides nagZ and ycfP are separated by 22 nucleotides ycfP and ndh are separated by 399 nucleotides
b1105: ycfM - predicted outer membrane lipoprotein (NCBI), at 1,161,861 to 1,162,502
ycfM
b1106: ycfN - thiamin kinase (NCBI), at 1,162,483 to 1,163,307
ycfN
b1107: nagZ - beta-hexosaminidase (NCBI), at 1,163,318 to 1,164,343
nagZ
b1108: ycfP - orf, hypothetical protein (VIMSS), at 1,164,366 to 1,164,908
ycfP
b1109: ndh - respiratory NADH dehydrogenase 2/cupric reductase (NCBI), at 1,165,308 to 1,166,612
ndh
Position (kb)
1163
1164
1165 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1162.347 kb on - strand, within ycfM at 1162.456 kb on - strand at 1162.640 kb on + strand, within ycfN at 1162.873 kb on - strand, within ycfN at 1162.875 kb on + strand, within ycfN at 1162.992 kb on - strand, within ycfN at 1163.024 kb on + strand, within ycfN at 1163.057 kb on - strand, within ycfN at 1163.213 kb on - strand, within ycfN at 1163.219 kb on + strand, within ycfN at 1163.220 kb on + strand, within ycfN at 1163.313 kb on + strand at 1163.324 kb on - strand at 1163.576 kb on + strand, within nagZ at 1163.576 kb on + strand, within nagZ at 1163.630 kb on - strand, within nagZ at 1163.687 kb on + strand, within nagZ at 1163.695 kb on - strand, within nagZ at 1163.695 kb on - strand, within nagZ at 1163.772 kb on + strand, within nagZ at 1163.819 kb on - strand, within nagZ at 1163.831 kb on - strand, within nagZ at 1163.831 kb on - strand, within nagZ at 1163.855 kb on - strand, within nagZ at 1163.949 kb on - strand, within nagZ at 1163.949 kb on - strand, within nagZ at 1164.356 kb on - strand at 1164.707 kb on - strand, within ycfP at 1164.715 kb on - strand, within ycfP at 1164.715 kb on - strand, within ycfP at 1164.925 kb on + strand at 1164.925 kb on + strand at 1164.943 kb on + strand at 1165.028 kb on - strand at 1165.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanol 0.08 vol% remove 1,162,347 - ycfM b1105 0.76 +1.4 1,162,456 - +1.8 1,162,640 + ycfN b1106 0.19 -2.0 1,162,873 - ycfN b1106 0.47 -2.0 1,162,875 + ycfN b1106 0.48 -2.2 1,162,992 - ycfN b1106 0.62 +0.0 1,163,024 + ycfN b1106 0.66 +1.6 1,163,057 - ycfN b1106 0.70 +1.4 1,163,213 - ycfN b1106 0.88 -1.7 1,163,219 + ycfN b1106 0.89 -1.1 1,163,220 + ycfN b1106 0.89 -2.4 1,163,313 + +2.7 1,163,324 - -2.8 1,163,576 + nagZ b1107 0.25 +0.1 1,163,576 + nagZ b1107 0.25 +0.3 1,163,630 - nagZ b1107 0.30 +0.9 1,163,687 + nagZ b1107 0.36 +1.9 1,163,695 - nagZ b1107 0.37 +1.2 1,163,695 - nagZ b1107 0.37 -0.3 1,163,772 + nagZ b1107 0.44 -2.4 1,163,819 - nagZ b1107 0.49 +0.4 1,163,831 - nagZ b1107 0.50 -1.0 1,163,831 - nagZ b1107 0.50 -0.0 1,163,855 - nagZ b1107 0.52 -1.2 1,163,949 - nagZ b1107 0.62 +0.7 1,163,949 - nagZ b1107 0.62 -0.9 1,164,356 - +2.0 1,164,707 - ycfP b1108 0.63 +0.1 1,164,715 - ycfP b1108 0.64 +2.0 1,164,715 - ycfP b1108 0.64 +0.8 1,164,925 + -1.2 1,164,925 + -1.2 1,164,943 + +0.4 1,165,028 - -3.2 1,165,028 - +0.2
Or see this region's nucleotide sequence