Strain Fitness in Escherichia coli BW25113 around b1093

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabH and fabD are separated by 15 nucleotidesfabD and fabG are separated by 12 nucleotidesfabG and acpP are separated by 210 nucleotidesacpP and fabF are separated by 87 nucleotides b1091: fabH - 3-oxoacyl-(acyl carrier protein) synthase (NCBI), at 1,147,982 to 1,148,935 fabH b1092: fabD - acyl carrier protein S-malonyltransferase (NCBI), at 1,148,951 to 1,149,880 fabD b1093: fabG - 3-oxoacyl-[acyl-carrier-protein] reductase (NCBI), at 1,149,893 to 1,150,627 fabG b1094: acpP - acyl carrier protein (NCBI), at 1,150,838 to 1,151,074 acpP b1095: fabF - 3-oxoacyl-(acyl carrier protein) synthase (NCBI), at 1,151,162 to 1,152,403 fabF Position (kb) 1149 1150 1151Strain fitness (log2 ratio) -1 0 1 2at 1149.875 kb on + strandat 1151.238 kb on + strandat 1151.266 kb on + strandat 1151.266 kb on + strandat 1151.368 kb on - strand, within fabFat 1151.416 kb on - strand, within fabFat 1151.427 kb on - strand, within fabFat 1151.427 kb on - strand, within fabFat 1151.530 kb on - strand, within fabFat 1151.530 kb on - strand, within fabFat 1151.535 kb on - strand, within fabFat 1151.535 kb on - strand, within fabFat 1151.608 kb on + strand, within fabFat 1151.608 kb on + strand, within fabFat 1151.610 kb on + strand, within fabF

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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1,149,875 + -0.4
1,151,238 + +1.7
1,151,266 + +2.0
1,151,266 + +1.9
1,151,368 - fabF b1095 0.17 +2.3
1,151,416 - fabF b1095 0.20 +1.2
1,151,427 - fabF b1095 0.21 +0.7
1,151,427 - fabF b1095 0.21 -1.1
1,151,530 - fabF b1095 0.30 +2.2
1,151,530 - fabF b1095 0.30 +1.4
1,151,535 - fabF b1095 0.30 +0.8
1,151,535 - fabF b1095 0.30 +0.3
1,151,608 + fabF b1095 0.36 +1.4
1,151,608 + fabF b1095 0.36 +2.7
1,151,610 + fabF b1095 0.36 +1.5

Or see this region's nucleotide sequence