Strain Fitness in Escherichia coli BW25113 around b0955

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrmf and fabA are separated by 69 nucleotidesfabA and ycbZ are separated by 68 nucleotidesycbZ and ycbG are separated by 185 nucleotidesycbG and ompA are separated by 75 nucleotides b0953: rmf - ribosome modulation factor (NCBI), at 1,014,938 to 1,015,105 rmf b0954: fabA - 3-hydroxydecanoyl-ACP dehydratase (NCBI), at 1,015,175 to 1,015,693 fabA b0955: ycbZ - predicted peptidase (NCBI), at 1,015,762 to 1,017,522 ycbZ b0956: ycbG - hypothetical protein (NCBI), at 1,017,708 to 1,018,160 ycbG b0957: ompA - outer membrane protein A (3a;II*;G;d) (NCBI), at 1,018,236 to 1,019,276 ompA Position (kb) 1015 1016 1017 1018Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1014.959 kb on + strand, within rmfat 1014.974 kb on + strand, within rmfat 1014.974 kb on + strand, within rmfat 1015.089 kb on + strandat 1015.097 kb on - strandat 1015.736 kb on - strandat 1015.736 kb on - strandat 1015.736 kb on - strandat 1015.740 kb on - strandat 1015.740 kb on - strandat 1015.876 kb on + strandat 1015.878 kb on - strandat 1015.894 kb on - strandat 1015.922 kb on - strandat 1015.935 kb on + strandat 1015.967 kb on - strand, within ycbZat 1015.967 kb on - strand, within ycbZat 1015.989 kb on + strand, within ycbZat 1016.003 kb on + strand, within ycbZat 1016.003 kb on + strand, within ycbZat 1016.012 kb on + strand, within ycbZat 1016.191 kb on + strand, within ycbZat 1016.228 kb on + strand, within ycbZat 1016.236 kb on + strand, within ycbZat 1016.667 kb on + strand, within ycbZat 1016.667 kb on + strand, within ycbZat 1016.712 kb on + strand, within ycbZat 1016.712 kb on + strand, within ycbZat 1016.712 kb on + strand, within ycbZat 1016.720 kb on - strand, within ycbZat 1016.797 kb on - strand, within ycbZat 1016.800 kb on - strand, within ycbZat 1016.977 kb on - strand, within ycbZat 1017.122 kb on - strand, within ycbZat 1017.122 kb on - strand, within ycbZat 1017.201 kb on + strand, within ycbZat 1017.201 kb on + strand, within ycbZat 1017.218 kb on - strand, within ycbZat 1017.218 kb on - strand, within ycbZat 1017.303 kb on + strand, within ycbZat 1017.321 kb on - strand, within ycbZat 1017.335 kb on - strand, within ycbZat 1017.425 kb on - strandat 1017.472 kb on + strandat 1017.607 kb on - strandat 1017.607 kb on - strandat 1018.221 kb on - strandat 1018.253 kb on - strandat 1018.253 kb on - strandat 1018.317 kb on - strandat 1018.327 kb on - strandat 1018.327 kb on - strandat 1018.327 kb on - strandat 1018.355 kb on - strand, within ompAat 1018.355 kb on - strand, within ompAat 1018.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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1,014,959 + rmf b0953 0.12 +0.6
1,014,974 + rmf b0953 0.21 -0.1
1,014,974 + rmf b0953 0.21 -1.8
1,015,089 + +1.1
1,015,097 - +0.1
1,015,736 - +2.2
1,015,736 - +1.7
1,015,736 - +0.3
1,015,740 - -0.5
1,015,740 - -0.1
1,015,876 + +2.1
1,015,878 - +0.3
1,015,894 - -0.7
1,015,922 - +0.8
1,015,935 + -1.1
1,015,967 - ycbZ b0955 0.12 -1.5
1,015,967 - ycbZ b0955 0.12 +3.3
1,015,989 + ycbZ b0955 0.13 -0.1
1,016,003 + ycbZ b0955 0.14 -2.6
1,016,003 + ycbZ b0955 0.14 +0.4
1,016,012 + ycbZ b0955 0.14 +1.3
1,016,191 + ycbZ b0955 0.24 +0.8
1,016,228 + ycbZ b0955 0.26 +3.0
1,016,236 + ycbZ b0955 0.27 +3.1
1,016,667 + ycbZ b0955 0.51 -1.7
1,016,667 + ycbZ b0955 0.51 -0.3
1,016,712 + ycbZ b0955 0.54 +2.3
1,016,712 + ycbZ b0955 0.54 +0.7
1,016,712 + ycbZ b0955 0.54 -0.8
1,016,720 - ycbZ b0955 0.54 -0.3
1,016,797 - ycbZ b0955 0.59 +3.4
1,016,800 - ycbZ b0955 0.59 +1.2
1,016,977 - ycbZ b0955 0.69 +1.5
1,017,122 - ycbZ b0955 0.77 +1.4
1,017,122 - ycbZ b0955 0.77 +1.7
1,017,201 + ycbZ b0955 0.82 -1.4
1,017,201 + ycbZ b0955 0.82 -2.2
1,017,218 - ycbZ b0955 0.83 +2.2
1,017,218 - ycbZ b0955 0.83 +0.9
1,017,303 + ycbZ b0955 0.88 +2.5
1,017,321 - ycbZ b0955 0.89 +1.7
1,017,335 - ycbZ b0955 0.89 +2.3
1,017,425 - -2.9
1,017,472 + -0.3
1,017,607 - -1.2
1,017,607 - +1.7
1,018,221 - -2.7
1,018,253 - -2.4
1,018,253 - -2.5
1,018,317 - -2.2
1,018,327 - -0.9
1,018,327 - -2.1
1,018,327 - -1.1
1,018,355 - ompA b0957 0.11 -1.7
1,018,355 - ompA b0957 0.11 -1.6
1,018,483 - +0.2

Or see this region's nucleotide sequence