Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uup and pqiA are separated by 129 nucleotides pqiA and pqiB are separated by 4 nucleotides
b0949: uup - fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI), at 1,009,187 to 1,011,094
uup
b0950: pqiA - paraquat-inducible membrane protein A (NCBI), at 1,011,224 to 1,012,477
pqiA
b0951: pqiB - paraquat-inducible protein B (NCBI), at 1,012,482 to 1,014,122
pqiB
Position (kb)
1011
1012
1013 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1010.325 kb on - strand, within uup at 1010.439 kb on + strand, within uup at 1010.589 kb on - strand, within uup at 1010.589 kb on - strand, within uup at 1010.662 kb on - strand, within uup at 1010.752 kb on - strand, within uup at 1010.782 kb on + strand, within uup at 1010.882 kb on - strand, within uup at 1010.882 kb on - strand, within uup at 1011.118 kb on + strand at 1011.607 kb on - strand, within pqiA at 1011.620 kb on - strand, within pqiA at 1011.748 kb on + strand, within pqiA at 1011.794 kb on + strand, within pqiA at 1011.876 kb on + strand, within pqiA at 1011.956 kb on - strand, within pqiA at 1011.982 kb on + strand, within pqiA at 1012.008 kb on - strand, within pqiA at 1012.008 kb on - strand, within pqiA at 1012.011 kb on + strand, within pqiA at 1012.067 kb on + strand, within pqiA at 1012.067 kb on + strand, within pqiA at 1012.131 kb on - strand, within pqiA at 1012.166 kb on - strand, within pqiA at 1012.166 kb on - strand, within pqiA at 1012.181 kb on - strand, within pqiA at 1012.260 kb on - strand, within pqiA at 1012.323 kb on - strand, within pqiA at 1012.323 kb on - strand, within pqiA at 1012.450 kb on + strand at 1012.450 kb on + strand at 1012.460 kb on + strand at 1012.570 kb on - strand at 1012.570 kb on - strand at 1012.625 kb on - strand at 1012.625 kb on - strand at 1012.672 kb on + strand, within pqiB at 1012.805 kb on + strand, within pqiB at 1012.847 kb on + strand, within pqiB at 1012.865 kb on - strand, within pqiB at 1012.865 kb on - strand, within pqiB at 1013.007 kb on + strand, within pqiB at 1013.020 kb on - strand, within pqiB at 1013.020 kb on - strand, within pqiB at 1013.031 kb on - strand, within pqiB at 1013.108 kb on - strand, within pqiB at 1013.119 kb on + strand, within pqiB at 1013.144 kb on + strand, within pqiB at 1013.168 kb on - strand, within pqiB at 1013.178 kb on - strand, within pqiB at 1013.178 kb on - strand, within pqiB at 1013.211 kb on - strand, within pqiB at 1013.329 kb on - strand, within pqiB at 1013.374 kb on + strand, within pqiB at 1013.374 kb on + strand, within pqiB at 1013.389 kb on - strand, within pqiB at 1013.399 kb on + strand, within pqiB
Per-strain Table
Position Strand Gene LocusTag Fraction octanol 0.08 vol% remove 1,010,325 - uup b0949 0.60 +1.1 1,010,439 + uup b0949 0.66 -2.1 1,010,589 - uup b0949 0.73 -0.7 1,010,589 - uup b0949 0.73 +0.4 1,010,662 - uup b0949 0.77 -3.2 1,010,752 - uup b0949 0.82 -1.5 1,010,782 + uup b0949 0.84 +2.4 1,010,882 - uup b0949 0.89 -1.5 1,010,882 - uup b0949 0.89 -2.8 1,011,118 + +3.2 1,011,607 - pqiA b0950 0.31 +0.1 1,011,620 - pqiA b0950 0.32 -2.1 1,011,748 + pqiA b0950 0.42 -1.3 1,011,794 + pqiA b0950 0.45 +0.5 1,011,876 + pqiA b0950 0.52 -2.9 1,011,956 - pqiA b0950 0.58 -1.9 1,011,982 + pqiA b0950 0.60 -0.8 1,012,008 - pqiA b0950 0.63 -3.5 1,012,008 - pqiA b0950 0.63 +0.6 1,012,011 + pqiA b0950 0.63 -2.7 1,012,067 + pqiA b0950 0.67 -4.1 1,012,067 + pqiA b0950 0.67 -2.5 1,012,131 - pqiA b0950 0.72 -3.2 1,012,166 - pqiA b0950 0.75 -2.7 1,012,166 - pqiA b0950 0.75 -0.1 1,012,181 - pqiA b0950 0.76 -2.6 1,012,260 - pqiA b0950 0.83 -2.5 1,012,323 - pqiA b0950 0.88 -2.5 1,012,323 - pqiA b0950 0.88 -1.5 1,012,450 + +1.5 1,012,450 + +0.5 1,012,460 + +0.7 1,012,570 - -0.9 1,012,570 - -2.4 1,012,625 - -1.9 1,012,625 - +0.3 1,012,672 + pqiB b0951 0.12 +0.3 1,012,805 + pqiB b0951 0.20 -2.2 1,012,847 + pqiB b0951 0.22 -0.7 1,012,865 - pqiB b0951 0.23 -0.1 1,012,865 - pqiB b0951 0.23 +0.9 1,013,007 + pqiB b0951 0.32 +0.8 1,013,020 - pqiB b0951 0.33 -1.5 1,013,020 - pqiB b0951 0.33 +0.7 1,013,031 - pqiB b0951 0.33 -3.0 1,013,108 - pqiB b0951 0.38 -1.0 1,013,119 + pqiB b0951 0.39 -3.3 1,013,144 + pqiB b0951 0.40 -1.9 1,013,168 - pqiB b0951 0.42 +0.8 1,013,178 - pqiB b0951 0.42 -1.8 1,013,178 - pqiB b0951 0.42 -1.0 1,013,211 - pqiB b0951 0.44 -3.4 1,013,329 - pqiB b0951 0.52 -3.1 1,013,374 + pqiB b0951 0.54 -2.5 1,013,374 + pqiB b0951 0.54 -0.2 1,013,389 - pqiB b0951 0.55 -2.0 1,013,399 + pqiB b0951 0.56 -1.4
Or see this region's nucleotide sequence