Strain Fitness in Escherichia coli BW25113 around b0508

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgcl and hyi are separated by 12 nucleotideshyi and glxR are separated by 99 nucleotides b0507: gcl - glyoxylate carboligase (NCBI), at 533,140 to 534,921 gcl b0508: hyi - hydroxypyruvate isomerase (NCBI), at 534,934 to 535,710 hyi b0509: glxR - tartronate semialdehyde reductase, NADH-dependent (NCBI), at 535,810 to 536,688 glxR Position (kb) 534 535 536Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 533.996 kb on - strand, within gclat 534.135 kb on + strand, within gclat 534.199 kb on - strand, within gclat 534.217 kb on - strand, within gclat 534.263 kb on + strand, within gclat 534.279 kb on - strand, within gclat 534.279 kb on - strand, within gclat 534.281 kb on - strand, within gclat 534.314 kb on + strand, within gclat 534.539 kb on + strand, within gclat 534.539 kb on + strand, within gclat 534.544 kb on - strand, within gclat 534.557 kb on + strand, within gclat 534.557 kb on + strand, within gclat 534.571 kb on - strand, within gclat 534.661 kb on + strand, within gclat 534.670 kb on - strand, within gclat 534.672 kb on + strand, within gclat 534.696 kb on + strand, within gclat 534.740 kb on + strand, within gclat 534.740 kb on + strand, within gclat 534.740 kb on + strand, within gclat 534.756 kb on + strandat 534.756 kb on + strandat 534.830 kb on + strandat 534.830 kb on + strandat 534.830 kb on + strandat 534.833 kb on + strandat 534.833 kb on + strandat 534.835 kb on + strandat 534.835 kb on + strandat 534.843 kb on - strandat 534.865 kb on + strandat 534.868 kb on + strandat 534.868 kb on + strandat 534.868 kb on + strandat 534.878 kb on + strandat 534.878 kb on + strandat 534.889 kb on + strandat 534.891 kb on + strandat 534.891 kb on + strandat 534.892 kb on + strandat 534.892 kb on + strandat 534.899 kb on - strandat 534.911 kb on + strandat 534.912 kb on + strandat 534.912 kb on + strandat 535.001 kb on + strandat 535.011 kb on + strandat 535.128 kb on - strand, within hyiat 535.143 kb on - strand, within hyiat 535.159 kb on + strand, within hyiat 535.162 kb on - strand, within hyiat 535.162 kb on - strand, within hyiat 535.207 kb on + strand, within hyiat 535.207 kb on + strand, within hyiat 535.207 kb on + strand, within hyiat 535.214 kb on + strand, within hyiat 535.214 kb on + strand, within hyiat 535.267 kb on + strand, within hyiat 535.356 kb on + strand, within hyiat 535.403 kb on + strand, within hyiat 535.435 kb on + strand, within hyiat 535.485 kb on + strand, within hyiat 535.511 kb on + strand, within hyiat 535.532 kb on - strand, within hyiat 535.681 kb on + strandat 535.686 kb on + strandat 535.691 kb on + strandat 535.691 kb on + strandat 535.696 kb on + strandat 535.704 kb on - strandat 535.717 kb on + strandat 535.717 kb on + strandat 535.722 kb on + strandat 535.759 kb on - strandat 535.759 kb on - strandat 535.760 kb on + strandat 535.760 kb on + strandat 535.760 kb on + strandat 535.841 kb on + strandat 535.849 kb on - strandat 535.860 kb on - strandat 535.882 kb on + strandat 535.890 kb on - strandat 535.892 kb on - strandat 535.952 kb on - strand, within glxRat 535.967 kb on - strand, within glxRat 535.969 kb on - strand, within glxRat 535.998 kb on + strand, within glxRat 536.006 kb on + strand, within glxRat 536.007 kb on + strand, within glxRat 536.007 kb on + strand, within glxRat 536.048 kb on - strand, within glxRat 536.128 kb on + strand, within glxRat 536.174 kb on + strand, within glxRat 536.187 kb on + strand, within glxRat 536.195 kb on - strand, within glxRat 536.295 kb on - strand, within glxRat 536.308 kb on - strand, within glxRat 536.393 kb on - strand, within glxRat 536.429 kb on + strand, within glxRat 536.492 kb on - strand, within glxRat 536.522 kb on + strand, within glxRat 536.533 kb on + strand, within glxRat 536.533 kb on + strand, within glxRat 536.536 kb on - strand, within glxRat 536.595 kb on + strand, within glxRat 536.595 kb on + strand, within glxRat 536.626 kb on + strandat 536.626 kb on + strandat 536.631 kb on + strandat 536.636 kb on + strandat 536.637 kb on - strandat 536.639 kb on + strandat 536.641 kb on + strandat 536.641 kb on + strandat 536.641 kb on + strandat 536.641 kb on + strandat 536.658 kb on + strandat 536.658 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.672 kb on + strandat 536.673 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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533,996 - gcl b0507 0.48 -0.1
534,135 + gcl b0507 0.56 +1.5
534,199 - gcl b0507 0.59 +1.5
534,217 - gcl b0507 0.60 +1.3
534,263 + gcl b0507 0.63 -0.8
534,279 - gcl b0507 0.64 +0.6
534,279 - gcl b0507 0.64 -0.1
534,281 - gcl b0507 0.64 +2.0
534,314 + gcl b0507 0.66 -1.3
534,539 + gcl b0507 0.79 -0.6
534,539 + gcl b0507 0.79 +1.0
534,544 - gcl b0507 0.79 +0.1
534,557 + gcl b0507 0.80 -0.4
534,557 + gcl b0507 0.80 -0.3
534,571 - gcl b0507 0.80 +0.4
534,661 + gcl b0507 0.85 +0.5
534,670 - gcl b0507 0.86 -0.9
534,672 + gcl b0507 0.86 -1.4
534,696 + gcl b0507 0.87 -1.5
534,740 + gcl b0507 0.90 -2.1
534,740 + gcl b0507 0.90 +3.4
534,740 + gcl b0507 0.90 -2.8
534,756 + -3.6
534,756 + +0.7
534,830 + -1.4
534,830 + +4.4
534,830 + +0.3
534,833 + -2.0
534,833 + +3.1
534,835 + +0.1
534,835 + +1.4
534,843 - +1.1
534,865 + +1.8
534,868 + +0.5
534,868 + -0.9
534,868 + +1.2
534,878 + +1.1
534,878 + +1.0
534,889 + -0.0
534,891 + +0.2
534,891 + -1.9
534,892 + -0.9
534,892 + -1.4
534,899 - -0.2
534,911 + -2.1
534,912 + +3.3
534,912 + -0.1
535,001 + -0.8
535,011 + -0.9
535,128 - hyi b0508 0.25 -1.9
535,143 - hyi b0508 0.27 -1.6
535,159 + hyi b0508 0.29 +1.7
535,162 - hyi b0508 0.29 +1.8
535,162 - hyi b0508 0.29 -3.0
535,207 + hyi b0508 0.35 -0.3
535,207 + hyi b0508 0.35 +2.5
535,207 + hyi b0508 0.35 +1.0
535,214 + hyi b0508 0.36 +3.0
535,214 + hyi b0508 0.36 +1.2
535,267 + hyi b0508 0.43 +2.1
535,356 + hyi b0508 0.54 +3.2
535,403 + hyi b0508 0.60 +1.9
535,435 + hyi b0508 0.64 -4.1
535,485 + hyi b0508 0.71 -0.4
535,511 + hyi b0508 0.74 -0.2
535,532 - hyi b0508 0.77 +0.9
535,681 + +0.3
535,686 + -1.5
535,691 + +1.3
535,691 + +1.0
535,696 + +1.0
535,704 - +1.8
535,717 + +0.7
535,717 + +2.3
535,722 + -0.1
535,759 - -1.9
535,759 - -3.5
535,760 + +2.2
535,760 + +1.5
535,760 + -0.9
535,841 + +2.0
535,849 - +0.5
535,860 - +2.5
535,882 + +1.0
535,890 - -1.8
535,892 - +0.1
535,952 - glxR b0509 0.16 -0.9
535,967 - glxR b0509 0.18 -1.0
535,969 - glxR b0509 0.18 -1.8
535,998 + glxR b0509 0.21 +0.6
536,006 + glxR b0509 0.22 +1.5
536,007 + glxR b0509 0.22 +2.7
536,007 + glxR b0509 0.22 -0.1
536,048 - glxR b0509 0.27 +2.1
536,128 + glxR b0509 0.36 +3.5
536,174 + glxR b0509 0.41 +0.6
536,187 + glxR b0509 0.43 -2.1
536,195 - glxR b0509 0.44 -1.0
536,295 - glxR b0509 0.55 -4.1
536,308 - glxR b0509 0.57 +0.3
536,393 - glxR b0509 0.66 +0.9
536,429 + glxR b0509 0.70 -1.4
536,492 - glxR b0509 0.78 +1.9
536,522 + glxR b0509 0.81 +1.6
536,533 + glxR b0509 0.82 +3.8
536,533 + glxR b0509 0.82 -1.8
536,536 - glxR b0509 0.83 -2.0
536,595 + glxR b0509 0.89 +1.7
536,595 + glxR b0509 0.89 -0.7
536,626 + -1.8
536,626 + +1.0
536,631 + +1.2
536,636 + +0.2
536,637 - +0.9
536,639 + +2.9
536,641 + -2.6
536,641 + -0.7
536,641 + -2.7
536,641 + -2.6
536,658 + -2.2
536,658 + -0.6
536,672 + +1.6
536,672 + +1.2
536,672 + +1.2
536,672 + -1.1
536,672 + +0.0
536,672 + -2.8
536,672 + +1.9
536,672 + +2.5
536,672 + -1.6
536,672 + -2.8
536,672 + -1.8
536,672 + -0.9
536,672 + -0.2
536,672 + -1.4
536,673 + +0.1

Or see this region's nucleotide sequence