Strain Fitness in Escherichia coli BW25113 around b0508
Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | octanol 0.08 vol% |
---|---|---|---|---|---|
remove | |||||
533,996 | - | gcl | b0507 | 0.48 | -0.1 |
534,135 | + | gcl | b0507 | 0.56 | +1.5 |
534,199 | - | gcl | b0507 | 0.59 | +1.5 |
534,217 | - | gcl | b0507 | 0.60 | +1.3 |
534,263 | + | gcl | b0507 | 0.63 | -0.8 |
534,279 | - | gcl | b0507 | 0.64 | +0.6 |
534,279 | - | gcl | b0507 | 0.64 | -0.1 |
534,281 | - | gcl | b0507 | 0.64 | +2.0 |
534,314 | + | gcl | b0507 | 0.66 | -1.3 |
534,539 | + | gcl | b0507 | 0.79 | -0.6 |
534,539 | + | gcl | b0507 | 0.79 | +1.0 |
534,544 | - | gcl | b0507 | 0.79 | +0.1 |
534,557 | + | gcl | b0507 | 0.80 | -0.4 |
534,557 | + | gcl | b0507 | 0.80 | -0.3 |
534,571 | - | gcl | b0507 | 0.80 | +0.4 |
534,661 | + | gcl | b0507 | 0.85 | +0.5 |
534,670 | - | gcl | b0507 | 0.86 | -0.9 |
534,672 | + | gcl | b0507 | 0.86 | -1.4 |
534,696 | + | gcl | b0507 | 0.87 | -1.5 |
534,740 | + | gcl | b0507 | 0.90 | -2.1 |
534,740 | + | gcl | b0507 | 0.90 | +3.4 |
534,740 | + | gcl | b0507 | 0.90 | -2.8 |
534,756 | + | -3.6 | |||
534,756 | + | +0.7 | |||
534,830 | + | -1.4 | |||
534,830 | + | +4.4 | |||
534,830 | + | +0.3 | |||
534,833 | + | -2.0 | |||
534,833 | + | +3.1 | |||
534,835 | + | +0.1 | |||
534,835 | + | +1.4 | |||
534,843 | - | +1.1 | |||
534,865 | + | +1.8 | |||
534,868 | + | +0.5 | |||
534,868 | + | -0.9 | |||
534,868 | + | +1.2 | |||
534,878 | + | +1.1 | |||
534,878 | + | +1.0 | |||
534,889 | + | -0.0 | |||
534,891 | + | +0.2 | |||
534,891 | + | -1.9 | |||
534,892 | + | -0.9 | |||
534,892 | + | -1.4 | |||
534,899 | - | -0.2 | |||
534,911 | + | -2.1 | |||
534,912 | + | +3.3 | |||
534,912 | + | -0.1 | |||
535,001 | + | -0.8 | |||
535,011 | + | -0.9 | |||
535,128 | - | hyi | b0508 | 0.25 | -1.9 |
535,143 | - | hyi | b0508 | 0.27 | -1.6 |
535,159 | + | hyi | b0508 | 0.29 | +1.7 |
535,162 | - | hyi | b0508 | 0.29 | +1.8 |
535,162 | - | hyi | b0508 | 0.29 | -3.0 |
535,207 | + | hyi | b0508 | 0.35 | -0.3 |
535,207 | + | hyi | b0508 | 0.35 | +2.5 |
535,207 | + | hyi | b0508 | 0.35 | +1.0 |
535,214 | + | hyi | b0508 | 0.36 | +3.0 |
535,214 | + | hyi | b0508 | 0.36 | +1.2 |
535,267 | + | hyi | b0508 | 0.43 | +2.1 |
535,356 | + | hyi | b0508 | 0.54 | +3.2 |
535,403 | + | hyi | b0508 | 0.60 | +1.9 |
535,435 | + | hyi | b0508 | 0.64 | -4.1 |
535,485 | + | hyi | b0508 | 0.71 | -0.4 |
535,511 | + | hyi | b0508 | 0.74 | -0.2 |
535,532 | - | hyi | b0508 | 0.77 | +0.9 |
535,681 | + | +0.3 | |||
535,686 | + | -1.5 | |||
535,691 | + | +1.3 | |||
535,691 | + | +1.0 | |||
535,696 | + | +1.0 | |||
535,704 | - | +1.8 | |||
535,717 | + | +0.7 | |||
535,717 | + | +2.3 | |||
535,722 | + | -0.1 | |||
535,759 | - | -1.9 | |||
535,759 | - | -3.5 | |||
535,760 | + | +2.2 | |||
535,760 | + | +1.5 | |||
535,760 | + | -0.9 | |||
535,841 | + | +2.0 | |||
535,849 | - | +0.5 | |||
535,860 | - | +2.5 | |||
535,882 | + | +1.0 | |||
535,890 | - | -1.8 | |||
535,892 | - | +0.1 | |||
535,952 | - | glxR | b0509 | 0.16 | -0.9 |
535,967 | - | glxR | b0509 | 0.18 | -1.0 |
535,969 | - | glxR | b0509 | 0.18 | -1.8 |
535,998 | + | glxR | b0509 | 0.21 | +0.6 |
536,006 | + | glxR | b0509 | 0.22 | +1.5 |
536,007 | + | glxR | b0509 | 0.22 | +2.7 |
536,007 | + | glxR | b0509 | 0.22 | -0.1 |
536,048 | - | glxR | b0509 | 0.27 | +2.1 |
536,128 | + | glxR | b0509 | 0.36 | +3.5 |
536,174 | + | glxR | b0509 | 0.41 | +0.6 |
536,187 | + | glxR | b0509 | 0.43 | -2.1 |
536,195 | - | glxR | b0509 | 0.44 | -1.0 |
536,295 | - | glxR | b0509 | 0.55 | -4.1 |
536,308 | - | glxR | b0509 | 0.57 | +0.3 |
536,393 | - | glxR | b0509 | 0.66 | +0.9 |
536,429 | + | glxR | b0509 | 0.70 | -1.4 |
536,492 | - | glxR | b0509 | 0.78 | +1.9 |
536,522 | + | glxR | b0509 | 0.81 | +1.6 |
536,533 | + | glxR | b0509 | 0.82 | +3.8 |
536,533 | + | glxR | b0509 | 0.82 | -1.8 |
536,536 | - | glxR | b0509 | 0.83 | -2.0 |
536,595 | + | glxR | b0509 | 0.89 | +1.7 |
536,595 | + | glxR | b0509 | 0.89 | -0.7 |
536,626 | + | -1.8 | |||
536,626 | + | +1.0 | |||
536,631 | + | +1.2 | |||
536,636 | + | +0.2 | |||
536,637 | - | +0.9 | |||
536,639 | + | +2.9 | |||
536,641 | + | -2.6 | |||
536,641 | + | -0.7 | |||
536,641 | + | -2.7 | |||
536,641 | + | -2.6 | |||
536,658 | + | -2.2 | |||
536,658 | + | -0.6 | |||
536,672 | + | +1.6 | |||
536,672 | + | +1.2 | |||
536,672 | + | +1.2 | |||
536,672 | + | -1.1 | |||
536,672 | + | +0.0 | |||
536,672 | + | -2.8 | |||
536,672 | + | +1.9 | |||
536,672 | + | +2.5 | |||
536,672 | + | -1.6 | |||
536,672 | + | -2.8 | |||
536,672 | + | -1.8 | |||
536,672 | + | -0.9 | |||
536,672 | + | -0.2 | |||
536,672 | + | -1.4 | |||
536,673 | + | +0.1 |
Or see this region's nucleotide sequence