Strain Fitness in Escherichia coli BW25113 around b0187

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntldcC and yaeR are separated by 56 nucleotidesyaeR and tilS are separated by 64 nucleotides b0186: ldcC - lysine decarboxylase 2, constitutive (NCBI), at 209,679 to 211,820 ldcC b0187: yaeR - orf, hypothetical protein (VIMSS), at 211,877 to 212,266 yaeR b0188: tilS - tRNA(Ile)-lysidine synthetase (NCBI), at 212,331 to 213,629 tilS Position (kb) 211 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 210.887 kb on + strand, within ldcCat 210.887 kb on + strand, within ldcCat 210.958 kb on + strand, within ldcCat 211.000 kb on - strand, within ldcCat 211.190 kb on + strand, within ldcCat 211.246 kb on + strand, within ldcCat 211.246 kb on + strand, within ldcCat 211.267 kb on + strand, within ldcCat 211.402 kb on - strand, within ldcCat 211.445 kb on + strand, within ldcCat 211.494 kb on + strand, within ldcCat 211.611 kb on - strandat 211.618 kb on + strandat 211.767 kb on + strandat 211.775 kb on - strandat 211.860 kb on + strandat 211.953 kb on + strand, within yaeRat 212.075 kb on + strand, within yaeRat 212.100 kb on + strand, within yaeRat 212.129 kb on - strand, within yaeRat 212.165 kb on + strand, within yaeRat 212.193 kb on + strand, within yaeRat 212.193 kb on + strand, within yaeRat 212.229 kb on - strandat 212.252 kb on + strandat 212.252 kb on + strandat 212.291 kb on + strandat 212.291 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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210,887 + ldcC b0186 0.56 -1.5
210,887 + ldcC b0186 0.56 -1.6
210,958 + ldcC b0186 0.60 -0.5
211,000 - ldcC b0186 0.62 +0.5
211,190 + ldcC b0186 0.71 +1.5
211,246 + ldcC b0186 0.73 +1.0
211,246 + ldcC b0186 0.73 -0.7
211,267 + ldcC b0186 0.74 +3.2
211,402 - ldcC b0186 0.80 -0.4
211,445 + ldcC b0186 0.82 -0.2
211,494 + ldcC b0186 0.85 -0.0
211,611 - +0.4
211,618 + -0.4
211,767 + -1.9
211,775 - +1.8
211,860 + -2.4
211,953 + yaeR b0187 0.19 -0.2
212,075 + yaeR b0187 0.51 +1.0
212,100 + yaeR b0187 0.57 -0.6
212,129 - yaeR b0187 0.65 +1.1
212,165 + yaeR b0187 0.74 +0.4
212,193 + yaeR b0187 0.81 -1.7
212,193 + yaeR b0187 0.81 -0.3
212,229 - -0.7
212,252 + -2.5
212,252 + -3.4
212,291 + +1.3
212,291 + -1.9

Or see this region's nucleotide sequence