Strain Fitness in Escherichia coli BW25113 around b0180

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxD and fabZ are separated by 104 nucleotidesfabZ and lpxA are separated by 3 nucleotideslpxA and lpxB overlap by 1 nucleotides b0179: lpxD - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (NCBI), at 200,971 to 201,996 lpxD b0180: fabZ - (3R)-hydroxymyristoyl ACP dehydratase (NCBI), at 202,101 to 202,556 fabZ b0181: lpxA - UDP-N-acetylglucosamine acyltransferase (NCBI), at 202,560 to 203,348 lpxA b0182: lpxB - lipid-A-disaccharide synthase (NCBI), at 203,348 to 204,496 lpxB Position (kb) 202 203Strain fitness (log2 ratio) -1 0 1at 201.990 kb on + strandat 203.351 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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201,990 + +0.4
203,351 + -0.1

Or see this region's nucleotide sequence