Strain Fitness in Escherichia coli BW25113 around b0009
Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | octanol 0.08 vol% |
---|---|---|---|---|---|
remove | |||||
8,312 | + | -2.9 | |||
8,400 | + | talB | b0008 | 0.17 | -1.2 |
8,400 | + | talB | b0008 | 0.17 | +0.7 |
8,607 | - | talB | b0008 | 0.39 | -2.0 |
8,623 | - | talB | b0008 | 0.40 | -2.0 |
8,625 | - | talB | b0008 | 0.41 | -1.3 |
8,625 | - | talB | b0008 | 0.41 | -1.9 |
8,625 | - | talB | b0008 | 0.41 | -0.9 |
8,630 | - | talB | b0008 | 0.41 | -4.0 |
8,670 | - | talB | b0008 | 0.45 | -2.3 |
8,670 | - | talB | b0008 | 0.45 | -2.8 |
8,711 | + | talB | b0008 | 0.50 | -1.9 |
8,721 | + | talB | b0008 | 0.51 | -0.4 |
8,721 | + | talB | b0008 | 0.51 | -0.8 |
8,721 | + | talB | b0008 | 0.51 | -3.1 |
8,729 | - | talB | b0008 | 0.51 | +1.5 |
8,729 | - | talB | b0008 | 0.51 | -3.2 |
8,813 | + | talB | b0008 | 0.60 | +0.3 |
8,830 | + | talB | b0008 | 0.62 | +0.5 |
8,870 | + | talB | b0008 | 0.66 | -0.7 |
8,872 | + | talB | b0008 | 0.66 | -2.1 |
8,934 | + | talB | b0008 | 0.73 | -2.7 |
8,979 | - | talB | b0008 | 0.78 | +0.8 |
8,988 | - | talB | b0008 | 0.79 | +1.9 |
9,016 | + | talB | b0008 | 0.82 | -1.2 |
9,034 | - | talB | b0008 | 0.83 | +1.1 |
9,079 | - | talB | b0008 | 0.88 | +3.0 |
9,094 | + | talB | b0008 | 0.90 | -4.5 |
9,185 | + | +0.0 | |||
9,206 | + | -0.9 | |||
9,206 | + | +1.6 | |||
9,224 | - | +0.3 | |||
9,228 | - | -1.1 | |||
9,229 | - | -2.1 | |||
9,261 | + | -0.2 | |||
9,261 | + | +3.1 | |||
9,376 | - | mog | b0009 | 0.12 | -2.4 |
9,376 | - | mog | b0009 | 0.12 | -0.2 |
9,376 | - | mog | b0009 | 0.12 | -0.7 |
9,403 | + | mog | b0009 | 0.16 | -0.1 |
9,406 | - | mog | b0009 | 0.17 | -0.8 |
9,451 | - | mog | b0009 | 0.25 | -2.9 |
9,477 | - | mog | b0009 | 0.29 | +1.3 |
9,477 | - | mog | b0009 | 0.29 | +0.5 |
9,483 | - | mog | b0009 | 0.30 | -2.2 |
9,485 | + | mog | b0009 | 0.30 | -0.8 |
9,485 | + | mog | b0009 | 0.30 | -0.1 |
9,508 | - | mog | b0009 | 0.34 | -0.9 |
9,553 | - | mog | b0009 | 0.42 | -2.8 |
9,553 | - | mog | b0009 | 0.42 | -3.0 |
9,601 | + | mog | b0009 | 0.50 | +0.5 |
9,763 | - | mog | b0009 | 0.78 | -1.0 |
9,763 | - | mog | b0009 | 0.78 | -0.3 |
9,765 | - | mog | b0009 | 0.78 | -1.8 |
9,799 | + | mog | b0009 | 0.84 | -0.6 |
9,816 | + | mog | b0009 | 0.87 | -1.6 |
9,826 | - | mog | b0009 | 0.88 | -0.8 |
9,826 | - | mog | b0009 | 0.88 | -1.5 |
9,862 | - | +0.3 | |||
9,941 | + | +1.8 | |||
10,021 | - | yaaH | b0010 | 0.16 | -2.4 |
10,021 | - | yaaH | b0010 | 0.16 | +2.7 |
10,184 | + | yaaH | b0010 | 0.45 | -0.1 |
10,194 | + | yaaH | b0010 | 0.47 | -0.6 |
10,194 | + | yaaH | b0010 | 0.47 | -0.5 |
10,223 | + | yaaH | b0010 | 0.52 | +0.9 |
10,296 | - | yaaH | b0010 | 0.65 | +0.8 |
10,334 | - | yaaH | b0010 | 0.72 | +1.6 |
10,364 | + | yaaH | b0010 | 0.77 | -1.3 |
10,364 | + | yaaH | b0010 | 0.77 | -0.6 |
10,414 | + | yaaH | b0010 | 0.86 | +0.6 |
10,425 | + | yaaH | b0010 | 0.88 | -2.7 |
10,445 | + | -2.3 | |||
10,445 | + | +2.4 | |||
10,455 | + | +1.9 | |||
10,464 | + | -2.2 | |||
10,487 | - | +0.2 | |||
10,489 | + | +1.2 | |||
10,489 | + | -1.5 | |||
10,594 | + | -3.1 | |||
10,646 | + | -0.3 | |||
10,648 | + | -0.2 | |||
10,656 | - | -3.6 | |||
10,664 | - | -3.8 | |||
10,731 | + | yaaW | b0011 | 0.12 | -3.0 |
10,731 | + | yaaW | b0011 | 0.12 | -1.1 |
10,761 | - | yaaW | b0011 | 0.17 | +0.9 |
10,762 | - | yaaW | b0011 | 0.17 | -0.0 |
10,763 | - | yaaW | b0011 | 0.17 | -0.0 |
10,766 | + | yaaW | b0011 | 0.17 | -0.4 |
10,766 | + | yaaW | b0011 | 0.17 | -1.2 |
10,795 | + | yaaW | b0011 | 0.21 | +2.3 |
10,808 | - | yaaW | b0011 | 0.23 | +0.4 |
Or see this region's nucleotide sequence