Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS14495

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS14490 and PFLU_RS14495 are separated by 109 nucleotidesPFLU_RS14495 and PFLU_RS14500 are separated by 173 nucleotidesPFLU_RS14500 and PFLU_RS14505 overlap by 4 nucleotides PFLU_RS14490: PFLU_RS14490 - nitronate monooxygenase, at 3,243,895 to 3,244,953 _RS14490 PFLU_RS14495: PFLU_RS14495 - alpha/beta hydrolase, at 3,245,063 to 3,245,941 _RS14495 PFLU_RS14500: PFLU_RS14500 - hypothetical protein, at 3,246,115 to 3,246,693 _RS14500 PFLU_RS14505: PFLU_RS14505 - bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada, at 3,246,690 to 3,247,736 _RS14505 Position (kb) 3245 3246Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3244.220 kb on + strand, within PFLU_RS14490at 3244.220 kb on + strand, within PFLU_RS14490at 3244.220 kb on + strand, within PFLU_RS14490at 3244.221 kb on - strand, within PFLU_RS14490at 3244.221 kb on - strand, within PFLU_RS14490at 3244.468 kb on + strand, within PFLU_RS14490at 3244.468 kb on + strand, within PFLU_RS14490at 3244.469 kb on - strand, within PFLU_RS14490at 3244.510 kb on + strand, within PFLU_RS14490at 3244.510 kb on + strand, within PFLU_RS14490at 3244.510 kb on + strand, within PFLU_RS14490at 3244.510 kb on + strand, within PFLU_RS14490at 3244.640 kb on + strand, within PFLU_RS14490at 3244.640 kb on + strand, within PFLU_RS14490at 3244.640 kb on + strand, within PFLU_RS14490at 3244.640 kb on + strand, within PFLU_RS14490at 3244.641 kb on - strand, within PFLU_RS14490at 3244.661 kb on + strand, within PFLU_RS14490at 3244.664 kb on + strand, within PFLU_RS14490at 3244.664 kb on + strand, within PFLU_RS14490at 3244.993 kb on + strandat 3244.993 kb on + strandat 3244.993 kb on + strandat 3244.993 kb on + strandat 3244.993 kb on + strandat 3244.993 kb on + strandat 3244.993 kb on + strandat 3244.993 kb on + strandat 3244.994 kb on - strandat 3244.994 kb on - strandat 3244.994 kb on - strandat 3245.026 kb on + strandat 3245.026 kb on + strandat 3245.027 kb on - strandat 3245.182 kb on + strand, within PFLU_RS14495at 3245.184 kb on + strand, within PFLU_RS14495at 3245.184 kb on + strand, within PFLU_RS14495at 3245.184 kb on + strand, within PFLU_RS14495at 3245.299 kb on + strand, within PFLU_RS14495at 3245.300 kb on - strand, within PFLU_RS14495at 3245.300 kb on - strand, within PFLU_RS14495at 3245.304 kb on + strand, within PFLU_RS14495at 3245.305 kb on - strand, within PFLU_RS14495at 3245.360 kb on + strand, within PFLU_RS14495at 3245.360 kb on + strand, within PFLU_RS14495at 3245.360 kb on + strand, within PFLU_RS14495at 3245.360 kb on + strand, within PFLU_RS14495at 3245.360 kb on + strand, within PFLU_RS14495at 3245.361 kb on - strand, within PFLU_RS14495at 3245.361 kb on - strand, within PFLU_RS14495at 3245.361 kb on - strand, within PFLU_RS14495at 3245.373 kb on + strand, within PFLU_RS14495at 3245.373 kb on + strand, within PFLU_RS14495at 3245.373 kb on + strand, within PFLU_RS14495at 3245.373 kb on + strand, within PFLU_RS14495at 3245.373 kb on + strand, within PFLU_RS14495at 3245.373 kb on + strand, within PFLU_RS14495at 3245.373 kb on + strand, within PFLU_RS14495at 3245.373 kb on + strand, within PFLU_RS14495at 3245.374 kb on - strand, within PFLU_RS14495at 3245.374 kb on - strand, within PFLU_RS14495at 3245.374 kb on - strand, within PFLU_RS14495at 3245.374 kb on - strand, within PFLU_RS14495at 3245.374 kb on - strand, within PFLU_RS14495at 3245.374 kb on - strand, within PFLU_RS14495at 3245.374 kb on - strand, within PFLU_RS14495at 3245.424 kb on + strand, within PFLU_RS14495at 3245.497 kb on - strand, within PFLU_RS14495at 3245.497 kb on - strand, within PFLU_RS14495at 3245.500 kb on + strand, within PFLU_RS14495at 3245.501 kb on - strand, within PFLU_RS14495at 3245.501 kb on - strand, within PFLU_RS14495at 3245.631 kb on + strand, within PFLU_RS14495at 3245.631 kb on + strand, within PFLU_RS14495at 3245.631 kb on + strand, within PFLU_RS14495at 3245.631 kb on + strand, within PFLU_RS14495at 3245.631 kb on + strand, within PFLU_RS14495at 3245.631 kb on + strand, within PFLU_RS14495at 3245.631 kb on + strand, within PFLU_RS14495at 3245.631 kb on + strand, within PFLU_RS14495at 3245.632 kb on - strand, within PFLU_RS14495at 3245.632 kb on - strand, within PFLU_RS14495at 3245.632 kb on - strand, within PFLU_RS14495at 3245.632 kb on - strand, within PFLU_RS14495at 3245.632 kb on - strand, within PFLU_RS14495at 3245.632 kb on - strand, within PFLU_RS14495at 3245.704 kb on - strand, within PFLU_RS14495at 3245.709 kb on + strand, within PFLU_RS14495at 3245.710 kb on - strand, within PFLU_RS14495at 3245.787 kb on - strand, within PFLU_RS14495at 3245.787 kb on - strand, within PFLU_RS14495at 3245.809 kb on + strand, within PFLU_RS14495at 3245.809 kb on + strand, within PFLU_RS14495at 3245.809 kb on + strand, within PFLU_RS14495at 3245.809 kb on + strand, within PFLU_RS14495at 3245.809 kb on + strand, within PFLU_RS14495at 3245.809 kb on + strand, within PFLU_RS14495at 3245.810 kb on - strand, within PFLU_RS14495at 3245.810 kb on - strand, within PFLU_RS14495at 3245.810 kb on - strand, within PFLU_RS14495at 3245.810 kb on - strand, within PFLU_RS14495at 3245.810 kb on - strand, within PFLU_RS14495at 3245.877 kb on + strandat 3245.877 kb on + strandat 3245.877 kb on + strandat 3245.877 kb on + strandat 3245.878 kb on - strandat 3245.878 kb on - strandat 3245.878 kb on - strandat 3245.888 kb on + strandat 3245.889 kb on - strandat 3245.951 kb on - strandat 3246.128 kb on + strandat 3246.129 kb on - strandat 3246.142 kb on + strandat 3246.142 kb on + strandat 3246.142 kb on + strandat 3246.142 kb on + strandat 3246.142 kb on + strandat 3246.142 kb on + strandat 3246.142 kb on + strandat 3246.143 kb on - strandat 3246.143 kb on - strandat 3246.143 kb on - strandat 3246.143 kb on - strandat 3246.143 kb on - strandat 3246.143 kb on - strandat 3246.143 kb on - strandat 3246.143 kb on - strandat 3246.143 kb on - strandat 3246.143 kb on - strandat 3246.143 kb on - strandat 3246.143 kb on - strandat 3246.596 kb on - strand, within PFLU_RS14500at 3246.604 kb on - strand, within PFLU_RS14500at 3246.604 kb on - strand, within PFLU_RS14500at 3246.615 kb on + strand, within PFLU_RS14500at 3246.615 kb on + strand, within PFLU_RS14500at 3246.657 kb on + strandat 3246.691 kb on + strandat 3246.764 kb on + strandat 3246.765 kb on - strandat 3246.771 kb on + strandat 3246.772 kb on - strandat 3246.772 kb on - strandat 3246.774 kb on + strandat 3246.775 kb on - strandat 3246.775 kb on - strandat 3246.775 kb on - strandat 3246.877 kb on + strand, within PFLU_RS14505at 3246.877 kb on + strand, within PFLU_RS14505at 3246.878 kb on - strand, within PFLU_RS14505

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,244,220 + PFLU_RS14490 0.31 -1.8
3,244,220 + PFLU_RS14490 0.31 -0.2
3,244,220 + PFLU_RS14490 0.31 +0.1
3,244,221 - PFLU_RS14490 0.31 +0.7
3,244,221 - PFLU_RS14490 0.31 +0.4
3,244,468 + PFLU_RS14490 0.54 +0.8
3,244,468 + PFLU_RS14490 0.54 +0.5
3,244,469 - PFLU_RS14490 0.54 -1.6
3,244,510 + PFLU_RS14490 0.58 +1.2
3,244,510 + PFLU_RS14490 0.58 +0.7
3,244,510 + PFLU_RS14490 0.58 +0.1
3,244,510 + PFLU_RS14490 0.58 -1.0
3,244,640 + PFLU_RS14490 0.70 -0.8
3,244,640 + PFLU_RS14490 0.70 -0.1
3,244,640 + PFLU_RS14490 0.70 +0.4
3,244,640 + PFLU_RS14490 0.70 -1.1
3,244,641 - PFLU_RS14490 0.70 +0.5
3,244,661 + PFLU_RS14490 0.72 -0.1
3,244,664 + PFLU_RS14490 0.73 +0.0
3,244,664 + PFLU_RS14490 0.73 -2.8
3,244,993 + +0.6
3,244,993 + +0.4
3,244,993 + +0.4
3,244,993 + +0.7
3,244,993 + +1.1
3,244,993 + -0.6
3,244,993 + -0.1
3,244,993 + -0.9
3,244,994 - +1.3
3,244,994 - +0.2
3,244,994 - -0.1
3,245,026 + +0.0
3,245,026 + +0.2
3,245,027 - -0.4
3,245,182 + PFLU_RS14495 0.14 +0.3
3,245,184 + PFLU_RS14495 0.14 +0.8
3,245,184 + PFLU_RS14495 0.14 -1.7
3,245,184 + PFLU_RS14495 0.14 -1.6
3,245,299 + PFLU_RS14495 0.27 +0.4
3,245,300 - PFLU_RS14495 0.27 -0.0
3,245,300 - PFLU_RS14495 0.27 +0.4
3,245,304 + PFLU_RS14495 0.27 -0.0
3,245,305 - PFLU_RS14495 0.28 -0.0
3,245,360 + PFLU_RS14495 0.34 -0.9
3,245,360 + PFLU_RS14495 0.34 +1.4
3,245,360 + PFLU_RS14495 0.34 +0.0
3,245,360 + PFLU_RS14495 0.34 +0.5
3,245,360 + PFLU_RS14495 0.34 -0.0
3,245,361 - PFLU_RS14495 0.34 +0.6
3,245,361 - PFLU_RS14495 0.34 -0.5
3,245,361 - PFLU_RS14495 0.34 +0.8
3,245,373 + PFLU_RS14495 0.35 +0.0
3,245,373 + PFLU_RS14495 0.35 +0.0
3,245,373 + PFLU_RS14495 0.35 +0.8
3,245,373 + PFLU_RS14495 0.35 +1.3
3,245,373 + PFLU_RS14495 0.35 -0.3
3,245,373 + PFLU_RS14495 0.35 +0.3
3,245,373 + PFLU_RS14495 0.35 +0.2
3,245,373 + PFLU_RS14495 0.35 +0.8
3,245,374 - PFLU_RS14495 0.35 +0.7
3,245,374 - PFLU_RS14495 0.35 +0.3
3,245,374 - PFLU_RS14495 0.35 +1.1
3,245,374 - PFLU_RS14495 0.35 -1.1
3,245,374 - PFLU_RS14495 0.35 +0.2
3,245,374 - PFLU_RS14495 0.35 +1.1
3,245,374 - PFLU_RS14495 0.35 -0.1
3,245,424 + PFLU_RS14495 0.41 +0.2
3,245,497 - PFLU_RS14495 0.49 -0.8
3,245,497 - PFLU_RS14495 0.49 +0.7
3,245,500 + PFLU_RS14495 0.50 -0.9
3,245,501 - PFLU_RS14495 0.50 +1.1
3,245,501 - PFLU_RS14495 0.50 -1.1
3,245,631 + PFLU_RS14495 0.65 +0.2
3,245,631 + PFLU_RS14495 0.65 +0.0
3,245,631 + PFLU_RS14495 0.65 +0.2
3,245,631 + PFLU_RS14495 0.65 +0.6
3,245,631 + PFLU_RS14495 0.65 -1.3
3,245,631 + PFLU_RS14495 0.65 -0.2
3,245,631 + PFLU_RS14495 0.65 -0.8
3,245,631 + PFLU_RS14495 0.65 +0.3
3,245,632 - PFLU_RS14495 0.65 +0.5
3,245,632 - PFLU_RS14495 0.65 +0.1
3,245,632 - PFLU_RS14495 0.65 +1.1
3,245,632 - PFLU_RS14495 0.65 +0.2
3,245,632 - PFLU_RS14495 0.65 +0.2
3,245,632 - PFLU_RS14495 0.65 -0.1
3,245,704 - PFLU_RS14495 0.73 +0.2
3,245,709 + PFLU_RS14495 0.73 +0.5
3,245,710 - PFLU_RS14495 0.74 -0.7
3,245,787 - PFLU_RS14495 0.82 +1.2
3,245,787 - PFLU_RS14495 0.82 +0.0
3,245,809 + PFLU_RS14495 0.85 -0.1
3,245,809 + PFLU_RS14495 0.85 +0.1
3,245,809 + PFLU_RS14495 0.85 -0.1
3,245,809 + PFLU_RS14495 0.85 +0.1
3,245,809 + PFLU_RS14495 0.85 +0.7
3,245,809 + PFLU_RS14495 0.85 +0.4
3,245,810 - PFLU_RS14495 0.85 +0.1
3,245,810 - PFLU_RS14495 0.85 +0.3
3,245,810 - PFLU_RS14495 0.85 +0.6
3,245,810 - PFLU_RS14495 0.85 +0.0
3,245,810 - PFLU_RS14495 0.85 -0.1
3,245,877 + -0.3
3,245,877 + +0.1
3,245,877 + -0.1
3,245,877 + +0.6
3,245,878 - -0.3
3,245,878 - -0.5
3,245,878 - +0.9
3,245,888 + -2.9
3,245,889 - -1.4
3,245,951 - -1.6
3,246,128 + -0.0
3,246,129 - -2.0
3,246,142 + +0.7
3,246,142 + -0.4
3,246,142 + +1.0
3,246,142 + -0.0
3,246,142 + +0.1
3,246,142 + -0.0
3,246,142 + +1.9
3,246,143 - -0.5
3,246,143 - +0.1
3,246,143 - -0.1
3,246,143 - -0.2
3,246,143 - +0.1
3,246,143 - +0.1
3,246,143 - -0.8
3,246,143 - -0.7
3,246,143 - -1.1
3,246,143 - -1.0
3,246,143 - +0.7
3,246,143 - +0.6
3,246,596 - PFLU_RS14500 0.83 +0.2
3,246,604 - PFLU_RS14500 0.84 -0.5
3,246,604 - PFLU_RS14500 0.84 -0.9
3,246,615 + PFLU_RS14500 0.86 -1.0
3,246,615 + PFLU_RS14500 0.86 -1.7
3,246,657 + +0.8
3,246,691 + -1.3
3,246,764 + -0.3
3,246,765 - +0.1
3,246,771 + +0.3
3,246,772 - +0.9
3,246,772 - -1.5
3,246,774 + +0.4
3,246,775 - +0.3
3,246,775 - +1.4
3,246,775 - +1.1
3,246,877 + PFLU_RS14505 0.18 -0.2
3,246,877 + PFLU_RS14505 0.18 +0.2
3,246,878 - PFLU_RS14505 0.18 -2.1

Or see this region's nucleotide sequence