Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13980

Experiment: D,L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate (C)
3,136,015	+				+0.2
3,136,015	+				-0.0
3,136,015	+				-0.7
3,136,016	-				+1.2
3,136,016	-				-2.0
3,136,016	-				+0.1
3,136,043	-				+0.8
3,136,058	+				+0.3
3,136,059	-				-0.6
3,136,059	-				+0.5
3,136,059	-				+0.2
3,136,059	-				-0.2
3,136,064	+				-1.9
3,136,064	+				-0.2
3,136,064	+				+0.2
3,136,064	+				-0.9
3,136,064	+				+2.7
3,136,064	+				-0.7
3,136,064	+				+0.2
3,136,064	+				+0.4
3,136,064	+				-1.6
3,136,064	+				-0.3
3,136,065	-				-0.8
3,136,065	-				-0.3
3,136,065	-				+0.2
3,136,065	-				-0.0
3,136,065	-				-0.5
3,136,065	-				-0.7
3,136,065	-				+1.0
3,136,065	-				+0.6
3,136,140	-		PFLU_RS13970	0.32	+0.0
3,136,158	+		PFLU_RS13970	0.41	+0.1
3,136,159	-		PFLU_RS13970	0.41	-0.7
3,136,159	-		PFLU_RS13970	0.41	+0.2
3,136,235	+		PFLU_RS13970	0.75	-2.0
3,136,235	+		PFLU_RS13970	0.75	-0.8
3,136,235	+		PFLU_RS13970	0.75	+1.1
3,136,235	+		PFLU_RS13970	0.75	-0.3
3,136,235	+		PFLU_RS13970	0.75	-0.5
3,136,235	+		PFLU_RS13970	0.75	+0.3
3,136,235	+		PFLU_RS13970	0.75	-0.9
3,136,235	+		PFLU_RS13970	0.75	+0.3
3,136,235	+		PFLU_RS13970	0.75	+0.4
3,136,235	+		PFLU_RS13970	0.75	-0.3
3,136,236	-		PFLU_RS13970	0.76	-0.8
3,136,236	-		PFLU_RS13970	0.76	-0.5
3,136,236	-		PFLU_RS13970	0.76	+0.8
3,136,236	-		PFLU_RS13970	0.76	+0.0
3,136,236	-		PFLU_RS13970	0.76	+0.5
3,136,236	-		PFLU_RS13970	0.76	+0.1
3,136,236	-		PFLU_RS13970	0.76	+0.0
3,136,236	-		PFLU_RS13970	0.76	+1.1
3,136,236	-		PFLU_RS13970	0.76	-0.3
3,136,236	-		PFLU_RS13970	0.76	-0.8
3,136,236	-		PFLU_RS13970	0.76	+0.7
3,136,236	-		PFLU_RS13970	0.76	+0.6
3,136,236	-		PFLU_RS13970	0.76	-0.7
3,136,237	+		PFLU_RS13970	0.76	-0.4
3,136,238	-		PFLU_RS13970	0.77	+0.1
3,136,324	-				-1.5
3,136,364	+				-0.1
3,136,451	-		PFLU_RS13975	0.12	-1.6
3,136,451	-		PFLU_RS13975	0.12	+0.2
3,136,451	-		PFLU_RS13975	0.12	-0.3
3,136,723	+		PFLU_RS13975	0.57	+0.3
3,136,724	-		PFLU_RS13975	0.57	-2.7
3,136,784	-		PFLU_RS13975	0.68	-0.6
3,136,962	+				-0.2
3,136,962	+				+0.2
3,136,962	+				-0.1
3,136,963	-				+0.6
3,137,037	+				-0.8
3,137,038	-				-0.5
3,137,061	-				+0.2
3,137,101	-				-0.0
3,137,101	-				+0.9
3,137,127	-				-0.7
3,137,127	-				+0.0
3,137,157	-		PFLU_RS13980	0.12	-0.8
3,137,271	+		PFLU_RS13980	0.20	-0.3
3,137,271	+		PFLU_RS13980	0.20	-1.3
3,137,271	+		PFLU_RS13980	0.20	+0.5
3,137,272	-		PFLU_RS13980	0.20	-2.5
3,137,272	-		PFLU_RS13980	0.20	-0.2
3,137,272	-		PFLU_RS13980	0.20	-0.4
3,137,272	-		PFLU_RS13980	0.20	-0.0
3,137,277	+		PFLU_RS13980	0.20	-0.8
3,137,367	+		PFLU_RS13980	0.26	+0.0
3,137,414	-		PFLU_RS13980	0.29	-0.4
3,137,542	-		PFLU_RS13980	0.38	+0.0
3,137,553	+		PFLU_RS13980	0.38	-0.6
3,137,582	-		PFLU_RS13980	0.40	+1.5
3,137,650	-		PFLU_RS13980	0.45	-3.0
3,137,697	+		PFLU_RS13980	0.48	+0.1
3,137,697	+		PFLU_RS13980	0.48	-0.7
3,137,697	+		PFLU_RS13980	0.48	+0.5
3,137,710	+		PFLU_RS13980	0.49	-0.6
3,137,711	-		PFLU_RS13980	0.49	+0.2
3,137,711	-		PFLU_RS13980	0.49	+0.6
3,137,711	-		PFLU_RS13980	0.49	+1.1
3,137,802	+		PFLU_RS13980	0.55	+0.7
3,137,850	+		PFLU_RS13980	0.58	+0.5
3,137,850	+		PFLU_RS13980	0.58	-0.7
3,137,850	+		PFLU_RS13980	0.58	+1.0
3,137,850	+		PFLU_RS13980	0.58	+0.2
3,137,851	-		PFLU_RS13980	0.58	+0.3
3,137,853	+		PFLU_RS13980	0.59	+0.1
3,137,853	+		PFLU_RS13980	0.59	-0.1
3,137,853	+		PFLU_RS13980	0.59	+0.7
3,137,854	-		PFLU_RS13980	0.59	+0.0
3,137,878	-		PFLU_RS13980	0.60	-0.2
3,137,998	-		PFLU_RS13980	0.68	+0.6
3,138,015	+		PFLU_RS13980	0.69	+0.4
3,138,015	+		PFLU_RS13980	0.69	-1.1
3,138,016	-		PFLU_RS13980	0.69	+0.3
3,138,045	+		PFLU_RS13980	0.71	+0.8
3,138,045	+		PFLU_RS13980	0.71	+0.7
3,138,046	-		PFLU_RS13980	0.71	-0.1
3,138,072	+		PFLU_RS13980	0.73	-0.3
3,138,072	+		PFLU_RS13980	0.73	-0.2
3,138,072	+		PFLU_RS13980	0.73	+0.7
3,138,072	+		PFLU_RS13980	0.73	-0.8
3,138,072	+		PFLU_RS13980	0.73	-0.8
3,138,078	+		PFLU_RS13980	0.74	-1.0
3,138,078	+		PFLU_RS13980	0.74	+0.9
3,138,078	+		PFLU_RS13980	0.74	-1.4
3,138,078	+		PFLU_RS13980	0.74	+0.8
3,138,079	-		PFLU_RS13980	0.74	+0.4
3,138,166	-		PFLU_RS13980	0.80	-1.1
3,138,186	+		PFLU_RS13980	0.81	+1.0
3,138,296	+		PFLU_RS13980	0.88	-0.5
3,138,403	-				-0.1
3,138,596	-				-0.5
3,138,650	+		PFLU_RS13985	0.12	+0.2
3,138,651	-		PFLU_RS13985	0.12	+0.2
3,138,651	-		PFLU_RS13985	0.12	+0.5
3,138,668	+		PFLU_RS13985	0.14	-0.3
3,138,829	+		PFLU_RS13985	0.25	-0.1
3,138,829	+		PFLU_RS13985	0.25	+0.2
3,138,884	+		PFLU_RS13985	0.28	+0.3
3,138,896	+		PFLU_RS13985	0.29	-0.2
3,138,896	+		PFLU_RS13985	0.29	+1.4
3,138,896	+		PFLU_RS13985	0.29	-1.3
3,138,897	-		PFLU_RS13985	0.29	+0.5
3,138,982	+		PFLU_RS13985	0.35	-0.6
3,139,154	+		PFLU_RS13985	0.47	+0.5
3,139,155	-		PFLU_RS13985	0.47	+0.0
3,139,169	+		PFLU_RS13985	0.48	+0.0
3,139,169	+		PFLU_RS13985	0.48	-0.4
3,139,170	-		PFLU_RS13985	0.48	+1.1
3,139,247	+		PFLU_RS13985	0.53	+0.2
3,139,265	+		PFLU_RS13985	0.54	-0.3
3,139,265	+		PFLU_RS13985	0.54	-0.2
3,139,265	+		PFLU_RS13985	0.54	-1.2
3,139,266	-		PFLU_RS13985	0.54	-0.2
3,139,329	+		PFLU_RS13985	0.59	+0.7
3,139,329	+		PFLU_RS13985	0.59	-0.3
3,139,329	+		PFLU_RS13985	0.59	-0.4
3,139,330	-		PFLU_RS13985	0.59	+0.3