Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13960

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS13945 and PFLU_RS13950 overlap by 1 nucleotidesPFLU_RS13950 and PFLU_RS13955 are separated by 53 nucleotidesPFLU_RS13955 and PFLU_RS13960 overlap by 4 nucleotidesPFLU_RS13960 and PFLU_RS13965 overlap by 4 nucleotidesPFLU_RS13965 and PFLU_RS13970 are separated by 50 nucleotidesPFLU_RS13970 and PFLU_RS13975 are separated by 89 nucleotides PFLU_RS13945: PFLU_RS13945 - hypothetical protein, at 3,134,600 to 3,134,971 _RS13945 PFLU_RS13950: PFLU_RS13950 - hypothetical protein, at 3,134,971 to 3,135,309 _RS13950 PFLU_RS13955: PFLU_RS13955 - hypothetical protein, at 3,135,363 to 3,135,578 _RS13955 PFLU_RS13960: PFLU_RS13960 - hypothetical protein, at 3,135,575 to 3,135,766 _RS13960 PFLU_RS13965: PFLU_RS13965 - hypothetical protein, at 3,135,763 to 3,136,017 _RS13965 PFLU_RS13970: PFLU_RS13970 - hypothetical protein, at 3,136,068 to 3,136,289 _RS13970 PFLU_RS13975: PFLU_RS13975 - hypothetical protein, at 3,136,379 to 3,136,978 _RS13975 Position (kb) 3135 3136Strain fitness (log2 ratio) -2 -1 0 1 2at 3134.589 kb on - strandat 3134.903 kb on - strand, within PFLU_RS13945at 3135.139 kb on + strand, within PFLU_RS13950at 3135.140 kb on - strand, within PFLU_RS13950at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.507 kb on + strand, within PFLU_RS13955at 3135.507 kb on + strand, within PFLU_RS13955at 3135.507 kb on + strand, within PFLU_RS13955at 3135.507 kb on + strand, within PFLU_RS13955at 3135.507 kb on + strand, within PFLU_RS13955at 3135.508 kb on - strand, within PFLU_RS13955at 3135.508 kb on - strand, within PFLU_RS13955at 3135.516 kb on + strand, within PFLU_RS13955at 3135.636 kb on + strand, within PFLU_RS13960at 3135.636 kb on + strand, within PFLU_RS13960at 3135.931 kb on - strand, within PFLU_RS13965at 3135.960 kb on + strand, within PFLU_RS13965at 3135.961 kb on - strand, within PFLU_RS13965at 3136.015 kb on + strandat 3136.015 kb on + strandat 3136.015 kb on + strandat 3136.016 kb on - strandat 3136.016 kb on - strandat 3136.016 kb on - strandat 3136.043 kb on - strandat 3136.058 kb on + strandat 3136.059 kb on - strandat 3136.059 kb on - strandat 3136.059 kb on - strandat 3136.059 kb on - strandat 3136.064 kb on + strandat 3136.064 kb on + strandat 3136.064 kb on + strandat 3136.064 kb on + strandat 3136.064 kb on + strandat 3136.064 kb on + strandat 3136.064 kb on + strandat 3136.064 kb on + strandat 3136.064 kb on + strandat 3136.064 kb on + strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.140 kb on - strand, within PFLU_RS13970at 3136.158 kb on + strand, within PFLU_RS13970at 3136.159 kb on - strand, within PFLU_RS13970at 3136.159 kb on - strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.237 kb on + strand, within PFLU_RS13970at 3136.238 kb on - strand, within PFLU_RS13970at 3136.324 kb on - strandat 3136.364 kb on + strandat 3136.451 kb on - strand, within PFLU_RS13975at 3136.451 kb on - strand, within PFLU_RS13975at 3136.451 kb on - strand, within PFLU_RS13975at 3136.723 kb on + strand, within PFLU_RS13975at 3136.724 kb on - strand, within PFLU_RS13975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
3,134,589 - +0.2
3,134,903 - PFLU_RS13945 0.81 +0.7
3,135,139 + PFLU_RS13950 0.50 -0.4
3,135,140 - PFLU_RS13950 0.50 -2.7
3,135,450 + PFLU_RS13955 0.40 +0.1
3,135,450 + PFLU_RS13955 0.40 -0.0
3,135,450 + PFLU_RS13955 0.40 -1.3
3,135,450 + PFLU_RS13955 0.40 -0.4
3,135,450 + PFLU_RS13955 0.40 +0.8
3,135,451 - PFLU_RS13955 0.41 -0.7
3,135,451 - PFLU_RS13955 0.41 +0.3
3,135,451 - PFLU_RS13955 0.41 +1.8
3,135,451 - PFLU_RS13955 0.41 +0.2
3,135,451 - PFLU_RS13955 0.41 +0.1
3,135,451 - PFLU_RS13955 0.41 +0.4
3,135,451 - PFLU_RS13955 0.41 +0.9
3,135,451 - PFLU_RS13955 0.41 +0.9
3,135,507 + PFLU_RS13955 0.67 -0.3
3,135,507 + PFLU_RS13955 0.67 +0.4
3,135,507 + PFLU_RS13955 0.67 -1.1
3,135,507 + PFLU_RS13955 0.67 -0.8
3,135,507 + PFLU_RS13955 0.67 -0.0
3,135,508 - PFLU_RS13955 0.67 +0.1
3,135,508 - PFLU_RS13955 0.67 -0.4
3,135,516 + PFLU_RS13955 0.71 +0.8
3,135,636 + PFLU_RS13960 0.32 -0.7
3,135,636 + PFLU_RS13960 0.32 -0.6
3,135,931 - PFLU_RS13965 0.66 +0.4
3,135,960 + PFLU_RS13965 0.77 +0.3
3,135,961 - PFLU_RS13965 0.78 -0.0
3,136,015 + +0.2
3,136,015 + -0.0
3,136,015 + -0.7
3,136,016 - +1.2
3,136,016 - -2.0
3,136,016 - +0.1
3,136,043 - +0.8
3,136,058 + +0.3
3,136,059 - -0.6
3,136,059 - +0.5
3,136,059 - +0.2
3,136,059 - -0.2
3,136,064 + -1.9
3,136,064 + -0.2
3,136,064 + +0.2
3,136,064 + -0.9
3,136,064 + +2.7
3,136,064 + -0.7
3,136,064 + +0.2
3,136,064 + +0.4
3,136,064 + -1.6
3,136,064 + -0.3
3,136,065 - -0.8
3,136,065 - -0.3
3,136,065 - +0.2
3,136,065 - -0.0
3,136,065 - -0.5
3,136,065 - -0.7
3,136,065 - +1.0
3,136,065 - +0.6
3,136,140 - PFLU_RS13970 0.32 +0.0
3,136,158 + PFLU_RS13970 0.41 +0.1
3,136,159 - PFLU_RS13970 0.41 -0.7
3,136,159 - PFLU_RS13970 0.41 +0.2
3,136,235 + PFLU_RS13970 0.75 -2.0
3,136,235 + PFLU_RS13970 0.75 -0.8
3,136,235 + PFLU_RS13970 0.75 +1.1
3,136,235 + PFLU_RS13970 0.75 -0.3
3,136,235 + PFLU_RS13970 0.75 -0.5
3,136,235 + PFLU_RS13970 0.75 +0.3
3,136,235 + PFLU_RS13970 0.75 -0.9
3,136,235 + PFLU_RS13970 0.75 +0.3
3,136,235 + PFLU_RS13970 0.75 +0.4
3,136,235 + PFLU_RS13970 0.75 -0.3
3,136,236 - PFLU_RS13970 0.76 -0.8
3,136,236 - PFLU_RS13970 0.76 -0.5
3,136,236 - PFLU_RS13970 0.76 +0.8
3,136,236 - PFLU_RS13970 0.76 +0.0
3,136,236 - PFLU_RS13970 0.76 +0.5
3,136,236 - PFLU_RS13970 0.76 +0.1
3,136,236 - PFLU_RS13970 0.76 +0.0
3,136,236 - PFLU_RS13970 0.76 +1.1
3,136,236 - PFLU_RS13970 0.76 -0.3
3,136,236 - PFLU_RS13970 0.76 -0.8
3,136,236 - PFLU_RS13970 0.76 +0.7
3,136,236 - PFLU_RS13970 0.76 +0.6
3,136,236 - PFLU_RS13970 0.76 -0.7
3,136,237 + PFLU_RS13970 0.76 -0.4
3,136,238 - PFLU_RS13970 0.77 +0.1
3,136,324 - -1.5
3,136,364 + -0.1
3,136,451 - PFLU_RS13975 0.12 -1.6
3,136,451 - PFLU_RS13975 0.12 +0.2
3,136,451 - PFLU_RS13975 0.12 -0.3
3,136,723 + PFLU_RS13975 0.57 +0.3
3,136,724 - PFLU_RS13975 0.57 -2.7

Or see this region's nucleotide sequence