Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03705 and PFLU_RS03710 overlap by 4 nucleotides PFLU_RS03710 and PFLU_RS03715 overlap by 8 nucleotides PFLU_RS03715 and PFLU_RS03720 are separated by 0 nucleotides PFLU_RS03720 and PFLU_RS03725 are separated by 3 nucleotides
PFLU_RS03705: PFLU_RS03705 - SDR family NAD(P)-dependent oxidoreductase, at 847,399 to 848,181
_RS03705
PFLU_RS03710: PFLU_RS03710 - nuclear transport factor 2 family protein, at 848,178 to 848,600
_RS03710
PFLU_RS03715: PFLU_RS03715 - deoxyribodipyrimidine photo-lyase, at 848,593 to 850,038
_RS03715
PFLU_RS03720: PFLU_RS03720 - MerR family transcriptional regulator, at 850,039 to 850,968
_RS03720
PFLU_RS03725: PFLU_RS03725 - DUF1722 domain-containing protein, at 850,972 to 851,931
_RS03725
Position (kb) 848
849
850
851 Strain fitness (log2 ratio) -2
-1
0
1 at 847.659 kb on + strand, within PFLU_RS03705 at 847.728 kb on - strand, within PFLU_RS03705 at 847.754 kb on + strand, within PFLU_RS03705 at 847.754 kb on + strand, within PFLU_RS03705 at 847.754 kb on + strand, within PFLU_RS03705 at 847.755 kb on - strand, within PFLU_RS03705 at 847.755 kb on - strand, within PFLU_RS03705 at 847.832 kb on + strand, within PFLU_RS03705 at 847.832 kb on + strand, within PFLU_RS03705 at 847.833 kb on - strand, within PFLU_RS03705 at 847.833 kb on - strand, within PFLU_RS03705 at 847.833 kb on - strand, within PFLU_RS03705 at 847.833 kb on - strand, within PFLU_RS03705 at 847.833 kb on - strand, within PFLU_RS03705 at 847.904 kb on + strand, within PFLU_RS03705 at 847.904 kb on + strand, within PFLU_RS03705 at 847.904 kb on + strand, within PFLU_RS03705 at 847.904 kb on + strand, within PFLU_RS03705 at 847.904 kb on + strand, within PFLU_RS03705 at 847.904 kb on + strand, within PFLU_RS03705 at 847.904 kb on + strand, within PFLU_RS03705 at 847.904 kb on + strand, within PFLU_RS03705 at 847.905 kb on - strand, within PFLU_RS03705 at 847.905 kb on - strand, within PFLU_RS03705 at 847.905 kb on - strand, within PFLU_RS03705 at 847.905 kb on - strand, within PFLU_RS03705 at 847.905 kb on - strand, within PFLU_RS03705 at 847.905 kb on - strand, within PFLU_RS03705 at 847.905 kb on - strand, within PFLU_RS03705 at 847.905 kb on - strand, within PFLU_RS03705 at 848.020 kb on + strand, within PFLU_RS03705 at 848.020 kb on + strand, within PFLU_RS03705 at 848.020 kb on + strand, within PFLU_RS03705 at 848.020 kb on + strand, within PFLU_RS03705 at 848.020 kb on + strand, within PFLU_RS03705 at 848.020 kb on + strand, within PFLU_RS03705 at 848.021 kb on - strand, within PFLU_RS03705 at 848.021 kb on - strand, within PFLU_RS03705 at 848.021 kb on - strand, within PFLU_RS03705 at 848.021 kb on - strand, within PFLU_RS03705 at 848.236 kb on + strand, within PFLU_RS03710 at 848.236 kb on + strand, within PFLU_RS03710 at 848.236 kb on + strand, within PFLU_RS03710 at 848.237 kb on - strand, within PFLU_RS03710 at 848.237 kb on - strand, within PFLU_RS03710 at 848.260 kb on + strand, within PFLU_RS03710 at 848.261 kb on - strand, within PFLU_RS03710 at 848.261 kb on - strand, within PFLU_RS03710 at 848.261 kb on - strand, within PFLU_RS03710 at 848.261 kb on - strand, within PFLU_RS03710 at 848.261 kb on - strand, within PFLU_RS03710 at 848.440 kb on + strand, within PFLU_RS03710 at 848.455 kb on + strand, within PFLU_RS03710 at 848.455 kb on + strand, within PFLU_RS03710 at 848.456 kb on - strand, within PFLU_RS03710 at 848.521 kb on + strand, within PFLU_RS03710 at 848.521 kb on + strand, within PFLU_RS03710 at 848.521 kb on + strand, within PFLU_RS03710 at 848.522 kb on - strand, within PFLU_RS03710 at 848.522 kb on - strand, within PFLU_RS03710 at 848.522 kb on - strand, within PFLU_RS03710 at 848.600 kb on + strand at 848.601 kb on - strand at 848.737 kb on + strand at 848.737 kb on + strand at 848.737 kb on + strand at 848.737 kb on + strand at 848.737 kb on + strand at 848.737 kb on + strand at 848.737 kb on + strand at 848.737 kb on + strand at 848.737 kb on + strand at 848.737 kb on + strand at 848.737 kb on + strand at 848.737 kb on + strand at 848.738 kb on - strand, within PFLU_RS03715 at 848.738 kb on - strand, within PFLU_RS03715 at 848.738 kb on - strand, within PFLU_RS03715 at 848.738 kb on - strand, within PFLU_RS03715 at 848.738 kb on - strand, within PFLU_RS03715 at 848.738 kb on - strand, within PFLU_RS03715 at 848.738 kb on - strand, within PFLU_RS03715 at 848.738 kb on - strand, within PFLU_RS03715 at 848.738 kb on - strand, within PFLU_RS03715 at 848.738 kb on - strand, within PFLU_RS03715 at 848.738 kb on - strand, within PFLU_RS03715 at 848.738 kb on - strand, within PFLU_RS03715 at 848.843 kb on + strand, within PFLU_RS03715 at 848.844 kb on - strand, within PFLU_RS03715 at 848.844 kb on - strand, within PFLU_RS03715 at 848.929 kb on - strand, within PFLU_RS03715 at 848.929 kb on - strand, within PFLU_RS03715 at 849.185 kb on + strand, within PFLU_RS03715 at 849.185 kb on + strand, within PFLU_RS03715 at 849.185 kb on + strand, within PFLU_RS03715 at 849.185 kb on + strand, within PFLU_RS03715 at 849.186 kb on - strand, within PFLU_RS03715 at 849.186 kb on - strand, within PFLU_RS03715 at 849.186 kb on - strand, within PFLU_RS03715 at 849.219 kb on + strand, within PFLU_RS03715 at 849.220 kb on - strand, within PFLU_RS03715 at 849.314 kb on + strand, within PFLU_RS03715 at 849.368 kb on + strand, within PFLU_RS03715 at 849.368 kb on + strand, within PFLU_RS03715 at 849.368 kb on + strand, within PFLU_RS03715 at 849.368 kb on + strand, within PFLU_RS03715 at 849.368 kb on + strand, within PFLU_RS03715 at 849.368 kb on + strand, within PFLU_RS03715 at 849.368 kb on + strand, within PFLU_RS03715 at 849.368 kb on + strand, within PFLU_RS03715 at 849.369 kb on - strand, within PFLU_RS03715 at 849.369 kb on - strand, within PFLU_RS03715 at 849.369 kb on - strand, within PFLU_RS03715 at 849.369 kb on - strand, within PFLU_RS03715 at 849.369 kb on - strand, within PFLU_RS03715 at 849.369 kb on - strand, within PFLU_RS03715 at 849.369 kb on - strand, within PFLU_RS03715 at 849.369 kb on - strand, within PFLU_RS03715 at 849.369 kb on - strand, within PFLU_RS03715 at 849.372 kb on - strand, within PFLU_RS03715 at 849.372 kb on - strand, within PFLU_RS03715 at 849.372 kb on - strand, within PFLU_RS03715 at 849.372 kb on - strand, within PFLU_RS03715 at 849.372 kb on - strand, within PFLU_RS03715 at 849.569 kb on + strand, within PFLU_RS03715 at 849.569 kb on + strand, within PFLU_RS03715 at 849.570 kb on - strand, within PFLU_RS03715 at 849.605 kb on + strand, within PFLU_RS03715 at 849.605 kb on + strand, within PFLU_RS03715 at 849.605 kb on + strand, within PFLU_RS03715 at 849.605 kb on + strand, within PFLU_RS03715 at 849.606 kb on - strand, within PFLU_RS03715 at 849.606 kb on - strand, within PFLU_RS03715 at 849.606 kb on - strand, within PFLU_RS03715 at 849.606 kb on - strand, within PFLU_RS03715 at 849.606 kb on - strand, within PFLU_RS03715 at 849.606 kb on - strand, within PFLU_RS03715 at 849.609 kb on + strand, within PFLU_RS03715 at 849.610 kb on - strand, within PFLU_RS03715 at 849.659 kb on + strand, within PFLU_RS03715 at 849.659 kb on + strand, within PFLU_RS03715 at 849.660 kb on - strand, within PFLU_RS03715 at 849.660 kb on - strand, within PFLU_RS03715 at 849.660 kb on - strand, within PFLU_RS03715 at 849.660 kb on - strand, within PFLU_RS03715 at 849.734 kb on + strand, within PFLU_RS03715 at 849.735 kb on - strand, within PFLU_RS03715 at 849.735 kb on - strand, within PFLU_RS03715 at 849.791 kb on - strand, within PFLU_RS03715 at 849.947 kb on + strand at 849.948 kb on - strand at 850.040 kb on + strand at 850.040 kb on + strand at 850.040 kb on + strand at 850.040 kb on + strand at 850.041 kb on - strand at 850.041 kb on - strand at 850.041 kb on - strand at 850.041 kb on - strand at 850.063 kb on + strand at 850.063 kb on + strand at 850.063 kb on + strand at 850.064 kb on - strand at 850.064 kb on - strand at 850.120 kb on + strand at 850.123 kb on + strand at 850.123 kb on + strand at 850.123 kb on + strand at 850.124 kb on - strand at 850.124 kb on - strand at 850.124 kb on - strand at 850.150 kb on + strand, within PFLU_RS03720 at 850.151 kb on - strand, within PFLU_RS03720 at 850.235 kb on + strand, within PFLU_RS03720 at 850.235 kb on + strand, within PFLU_RS03720 at 850.235 kb on + strand, within PFLU_RS03720 at 850.236 kb on - strand, within PFLU_RS03720 at 850.236 kb on - strand, within PFLU_RS03720 at 850.351 kb on + strand, within PFLU_RS03720 at 850.433 kb on + strand, within PFLU_RS03720 at 850.433 kb on + strand, within PFLU_RS03720 at 850.433 kb on + strand, within PFLU_RS03720 at 850.433 kb on + strand, within PFLU_RS03720 at 850.433 kb on + strand, within PFLU_RS03720 at 850.433 kb on + strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.434 kb on - strand, within PFLU_RS03720 at 850.437 kb on + strand, within PFLU_RS03720 at 850.437 kb on + strand, within PFLU_RS03720 at 850.437 kb on + strand, within PFLU_RS03720 at 850.438 kb on - strand, within PFLU_RS03720 at 850.438 kb on - strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.767 kb on + strand, within PFLU_RS03720 at 850.768 kb on - strand, within PFLU_RS03720 at 850.768 kb on - strand, within PFLU_RS03720 at 850.951 kb on + strand at 850.951 kb on + strand at 850.951 kb on + strand at 850.973 kb on + strand at 850.973 kb on + strand at 850.973 kb on + strand at 850.973 kb on + strand at 850.973 kb on + strand at 850.973 kb on + strand at 850.974 kb on - strand at 850.974 kb on - strand at 851.019 kb on - strand at 851.019 kb on - strand at 851.019 kb on - strand at 851.036 kb on + strand at 851.036 kb on + strand at 851.036 kb on + strand at 851.037 kb on - strand at 851.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 847,659 + PFLU_RS03705 0.33 -0.5 847,728 - PFLU_RS03705 0.42 +0.1 847,754 + PFLU_RS03705 0.45 -0.2 847,754 + PFLU_RS03705 0.45 -0.1 847,754 + PFLU_RS03705 0.45 -0.7 847,755 - PFLU_RS03705 0.45 -0.3 847,755 - PFLU_RS03705 0.45 +0.3 847,832 + PFLU_RS03705 0.55 +0.0 847,832 + PFLU_RS03705 0.55 +1.0 847,833 - PFLU_RS03705 0.55 -0.1 847,833 - PFLU_RS03705 0.55 -0.3 847,833 - PFLU_RS03705 0.55 -0.5 847,833 - PFLU_RS03705 0.55 -0.3 847,833 - PFLU_RS03705 0.55 -0.0 847,904 + PFLU_RS03705 0.64 -0.4 847,904 + PFLU_RS03705 0.64 +0.0 847,904 + PFLU_RS03705 0.64 +1.1 847,904 + PFLU_RS03705 0.64 -0.3 847,904 + PFLU_RS03705 0.64 -0.2 847,904 + PFLU_RS03705 0.64 +0.8 847,904 + PFLU_RS03705 0.64 +0.4 847,904 + PFLU_RS03705 0.64 +0.7 847,905 - PFLU_RS03705 0.65 -0.5 847,905 - PFLU_RS03705 0.65 -0.5 847,905 - PFLU_RS03705 0.65 +0.7 847,905 - PFLU_RS03705 0.65 -0.2 847,905 - PFLU_RS03705 0.65 -0.4 847,905 - PFLU_RS03705 0.65 +0.0 847,905 - PFLU_RS03705 0.65 +0.6 847,905 - PFLU_RS03705 0.65 -2.1 848,020 + PFLU_RS03705 0.79 +0.5 848,020 + PFLU_RS03705 0.79 -1.1 848,020 + PFLU_RS03705 0.79 +0.4 848,020 + PFLU_RS03705 0.79 -0.5 848,020 + PFLU_RS03705 0.79 +0.5 848,020 + PFLU_RS03705 0.79 +0.1 848,021 - PFLU_RS03705 0.79 -0.6 848,021 - PFLU_RS03705 0.79 -0.3 848,021 - PFLU_RS03705 0.79 +0.0 848,021 - PFLU_RS03705 0.79 +0.1 848,236 + PFLU_RS03710 0.14 +0.4 848,236 + PFLU_RS03710 0.14 +0.1 848,236 + PFLU_RS03710 0.14 -0.5 848,237 - PFLU_RS03710 0.14 +0.4 848,237 - PFLU_RS03710 0.14 -1.8 848,260 + PFLU_RS03710 0.19 +0.3 848,261 - PFLU_RS03710 0.20 +0.2 848,261 - PFLU_RS03710 0.20 -1.6 848,261 - PFLU_RS03710 0.20 -0.5 848,261 - PFLU_RS03710 0.20 +0.8 848,261 - PFLU_RS03710 0.20 +0.5 848,440 + PFLU_RS03710 0.62 -0.1 848,455 + PFLU_RS03710 0.65 -0.0 848,455 + PFLU_RS03710 0.65 -0.3 848,456 - PFLU_RS03710 0.66 -0.2 848,521 + PFLU_RS03710 0.81 +0.5 848,521 + PFLU_RS03710 0.81 -0.1 848,521 + PFLU_RS03710 0.81 -0.1 848,522 - PFLU_RS03710 0.81 +0.5 848,522 - PFLU_RS03710 0.81 +0.5 848,522 - PFLU_RS03710 0.81 +0.3 848,600 + +0.4 848,601 - +0.4 848,737 + +0.1 848,737 + -1.3 848,737 + -0.0 848,737 + +0.6 848,737 + +0.3 848,737 + -1.4 848,737 + -1.3 848,737 + +0.1 848,737 + -1.0 848,737 + -1.1 848,737 + -0.7 848,737 + -0.1 848,738 - PFLU_RS03715 0.10 -0.6 848,738 - PFLU_RS03715 0.10 -0.9 848,738 - PFLU_RS03715 0.10 +0.3 848,738 - PFLU_RS03715 0.10 +0.2 848,738 - PFLU_RS03715 0.10 -1.0 848,738 - PFLU_RS03715 0.10 +0.0 848,738 - PFLU_RS03715 0.10 -0.5 848,738 - PFLU_RS03715 0.10 +0.6 848,738 - PFLU_RS03715 0.10 -1.0 848,738 - PFLU_RS03715 0.10 +0.3 848,738 - PFLU_RS03715 0.10 +0.0 848,738 - PFLU_RS03715 0.10 -0.1 848,843 + PFLU_RS03715 0.17 -0.8 848,844 - PFLU_RS03715 0.17 +0.7 848,844 - PFLU_RS03715 0.17 -0.7 848,929 - PFLU_RS03715 0.23 +0.7 848,929 - PFLU_RS03715 0.23 -0.1 849,185 + PFLU_RS03715 0.41 -1.0 849,185 + PFLU_RS03715 0.41 -0.2 849,185 + PFLU_RS03715 0.41 +1.4 849,185 + PFLU_RS03715 0.41 -0.2 849,186 - PFLU_RS03715 0.41 +0.4 849,186 - PFLU_RS03715 0.41 +1.0 849,186 - PFLU_RS03715 0.41 +0.7 849,219 + PFLU_RS03715 0.43 +0.1 849,220 - PFLU_RS03715 0.43 +0.2 849,314 + PFLU_RS03715 0.50 +0.1 849,368 + PFLU_RS03715 0.54 +0.4 849,368 + PFLU_RS03715 0.54 +1.2 849,368 + PFLU_RS03715 0.54 +0.1 849,368 + PFLU_RS03715 0.54 -0.2 849,368 + PFLU_RS03715 0.54 +0.8 849,368 + PFLU_RS03715 0.54 -0.2 849,368 + PFLU_RS03715 0.54 +0.0 849,368 + PFLU_RS03715 0.54 +0.7 849,369 - PFLU_RS03715 0.54 -0.3 849,369 - PFLU_RS03715 0.54 -1.0 849,369 - PFLU_RS03715 0.54 +0.9 849,369 - PFLU_RS03715 0.54 +0.4 849,369 - PFLU_RS03715 0.54 +0.9 849,369 - PFLU_RS03715 0.54 +0.6 849,369 - PFLU_RS03715 0.54 -0.4 849,369 - PFLU_RS03715 0.54 +0.0 849,369 - PFLU_RS03715 0.54 +0.8 849,372 - PFLU_RS03715 0.54 -0.6 849,372 - PFLU_RS03715 0.54 -0.0 849,372 - PFLU_RS03715 0.54 +0.2 849,372 - PFLU_RS03715 0.54 +0.0 849,372 - PFLU_RS03715 0.54 +1.3 849,569 + PFLU_RS03715 0.67 -0.4 849,569 + PFLU_RS03715 0.67 +0.6 849,570 - PFLU_RS03715 0.68 -0.3 849,605 + PFLU_RS03715 0.70 +1.3 849,605 + PFLU_RS03715 0.70 +0.9 849,605 + PFLU_RS03715 0.70 +0.4 849,605 + PFLU_RS03715 0.70 +1.2 849,606 - PFLU_RS03715 0.70 +0.9 849,606 - PFLU_RS03715 0.70 +0.4 849,606 - PFLU_RS03715 0.70 +0.1 849,606 - PFLU_RS03715 0.70 +0.3 849,606 - PFLU_RS03715 0.70 +0.7 849,606 - PFLU_RS03715 0.70 -0.1 849,609 + PFLU_RS03715 0.70 +0.1 849,610 - PFLU_RS03715 0.70 +0.1 849,659 + PFLU_RS03715 0.74 +0.2 849,659 + PFLU_RS03715 0.74 +0.1 849,660 - PFLU_RS03715 0.74 +0.4 849,660 - PFLU_RS03715 0.74 +0.2 849,660 - PFLU_RS03715 0.74 -0.1 849,660 - PFLU_RS03715 0.74 +0.7 849,734 + PFLU_RS03715 0.79 -0.7 849,735 - PFLU_RS03715 0.79 +0.7 849,735 - PFLU_RS03715 0.79 +1.4 849,791 - PFLU_RS03715 0.83 -0.0 849,947 + +0.3 849,948 - +0.2 850,040 + +0.5 850,040 + +1.0 850,040 + -0.1 850,040 + +0.1 850,041 - -0.3 850,041 - -0.2 850,041 - +0.1 850,041 - -0.2 850,063 + +0.5 850,063 + +0.3 850,063 + +0.3 850,064 - -0.3 850,064 - +0.4 850,120 + -0.6 850,123 + -1.7 850,123 + +0.4 850,123 + -0.3 850,124 - -0.1 850,124 - -0.2 850,124 - +0.2 850,150 + PFLU_RS03720 0.12 -0.0 850,151 - PFLU_RS03720 0.12 +0.3 850,235 + PFLU_RS03720 0.21 +0.3 850,235 + PFLU_RS03720 0.21 -0.3 850,235 + PFLU_RS03720 0.21 +0.3 850,236 - PFLU_RS03720 0.21 -0.1 850,236 - PFLU_RS03720 0.21 -0.7 850,351 + PFLU_RS03720 0.34 +0.4 850,433 + PFLU_RS03720 0.42 -0.1 850,433 + PFLU_RS03720 0.42 -0.3 850,433 + PFLU_RS03720 0.42 +0.6 850,433 + PFLU_RS03720 0.42 +0.4 850,433 + PFLU_RS03720 0.42 -0.7 850,433 + PFLU_RS03720 0.42 -0.1 850,434 - PFLU_RS03720 0.42 +0.4 850,434 - PFLU_RS03720 0.42 -0.0 850,434 - PFLU_RS03720 0.42 +0.5 850,434 - PFLU_RS03720 0.42 -0.5 850,434 - PFLU_RS03720 0.42 -0.8 850,434 - PFLU_RS03720 0.42 +0.1 850,434 - PFLU_RS03720 0.42 -0.2 850,434 - PFLU_RS03720 0.42 -0.1 850,437 + PFLU_RS03720 0.43 +0.2 850,437 + PFLU_RS03720 0.43 +0.6 850,437 + PFLU_RS03720 0.43 +0.4 850,438 - PFLU_RS03720 0.43 +0.1 850,438 - PFLU_RS03720 0.43 +0.1 850,767 + PFLU_RS03720 0.78 +0.6 850,767 + PFLU_RS03720 0.78 -0.3 850,767 + PFLU_RS03720 0.78 +0.5 850,767 + PFLU_RS03720 0.78 -0.9 850,767 + PFLU_RS03720 0.78 -0.7 850,767 + PFLU_RS03720 0.78 -0.0 850,767 + PFLU_RS03720 0.78 +1.0 850,768 - PFLU_RS03720 0.78 -0.1 850,768 - PFLU_RS03720 0.78 -0.5 850,951 + -1.0 850,951 + +0.2 850,951 + +0.0 850,973 + -0.5 850,973 + +0.3 850,973 + -0.5 850,973 + +0.3 850,973 + +1.2 850,973 + -1.4 850,974 - -0.8 850,974 - +0.4 851,019 - +0.7 851,019 - +0.0 851,019 - -0.4 851,036 + -0.0 851,036 + +1.5 851,036 + +0.3 851,037 - -0.9 851,037 - -0.2
Or see this region's nucleotide sequence