Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01600 and PFLU_RS01605 are separated by 301 nucleotides PFLU_RS01605 and PFLU_RS01610 overlap by 1 nucleotides PFLU_RS01610 and PFLU_RS01615 are separated by 0 nucleotides PFLU_RS01615 and PFLU_RS01620 are separated by 39 nucleotides
PFLU_RS01600: PFLU_RS01600 - OFA family MFS transporter, at 358,677 to 360,338
_RS01600
PFLU_RS01605: PFLU_RS01605 - imidazoleglycerol-phosphate dehydratase HisB, at 360,640 to 361,233
_RS01605
PFLU_RS01610: PFLU_RS01610 - imidazole glycerol phosphate synthase subunit HisH, at 361,233 to 361,871
_RS01610
PFLU_RS01615: PFLU_RS01615 - DUF2164 domain-containing protein, at 361,872 to 362,129
_RS01615
PFLU_RS01620: PFLU_RS01620 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 362,169 to 362,906
_RS01620
Position (kb) 360
361
362 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 359.745 kb on + strand, within PFLU_RS01600 at 359.756 kb on + strand, within PFLU_RS01600 at 359.766 kb on + strand, within PFLU_RS01600 at 359.766 kb on + strand, within PFLU_RS01600 at 359.767 kb on - strand, within PFLU_RS01600 at 359.767 kb on - strand, within PFLU_RS01600 at 359.767 kb on - strand, within PFLU_RS01600 at 359.767 kb on - strand, within PFLU_RS01600 at 359.767 kb on - strand, within PFLU_RS01600 at 359.767 kb on - strand, within PFLU_RS01600 at 359.767 kb on - strand, within PFLU_RS01600 at 359.767 kb on - strand, within PFLU_RS01600 at 359.799 kb on + strand, within PFLU_RS01600 at 359.877 kb on + strand, within PFLU_RS01600 at 359.878 kb on - strand, within PFLU_RS01600 at 359.878 kb on - strand, within PFLU_RS01600 at 359.878 kb on - strand, within PFLU_RS01600 at 359.908 kb on - strand, within PFLU_RS01600 at 360.009 kb on + strand, within PFLU_RS01600 at 360.009 kb on + strand, within PFLU_RS01600 at 360.009 kb on + strand, within PFLU_RS01600 at 360.009 kb on + strand, within PFLU_RS01600 at 360.009 kb on + strand, within PFLU_RS01600 at 360.009 kb on + strand, within PFLU_RS01600 at 360.009 kb on + strand, within PFLU_RS01600 at 360.009 kb on + strand, within PFLU_RS01600 at 360.009 kb on + strand, within PFLU_RS01600 at 360.009 kb on + strand, within PFLU_RS01600 at 360.010 kb on - strand, within PFLU_RS01600 at 360.010 kb on - strand, within PFLU_RS01600 at 360.010 kb on - strand, within PFLU_RS01600 at 360.010 kb on - strand, within PFLU_RS01600 at 360.010 kb on - strand, within PFLU_RS01600 at 360.010 kb on - strand, within PFLU_RS01600 at 360.010 kb on - strand, within PFLU_RS01600 at 360.022 kb on - strand, within PFLU_RS01600 at 360.057 kb on + strand, within PFLU_RS01600 at 360.072 kb on + strand, within PFLU_RS01600 at 360.072 kb on + strand, within PFLU_RS01600 at 360.072 kb on + strand, within PFLU_RS01600 at 360.072 kb on + strand, within PFLU_RS01600 at 360.072 kb on + strand, within PFLU_RS01600 at 360.072 kb on + strand, within PFLU_RS01600 at 360.072 kb on + strand, within PFLU_RS01600 at 360.072 kb on + strand, within PFLU_RS01600 at 360.073 kb on - strand, within PFLU_RS01600 at 360.073 kb on - strand, within PFLU_RS01600 at 360.073 kb on - strand, within PFLU_RS01600 at 360.073 kb on - strand, within PFLU_RS01600 at 360.073 kb on - strand, within PFLU_RS01600 at 360.073 kb on - strand, within PFLU_RS01600 at 360.141 kb on + strand, within PFLU_RS01600 at 360.141 kb on + strand, within PFLU_RS01600 at 360.141 kb on + strand, within PFLU_RS01600 at 360.141 kb on + strand, within PFLU_RS01600 at 360.141 kb on + strand, within PFLU_RS01600 at 360.141 kb on + strand, within PFLU_RS01600 at 360.141 kb on + strand, within PFLU_RS01600 at 360.141 kb on + strand, within PFLU_RS01600 at 360.142 kb on - strand, within PFLU_RS01600 at 360.142 kb on - strand, within PFLU_RS01600 at 360.142 kb on - strand, within PFLU_RS01600 at 360.142 kb on - strand, within PFLU_RS01600 at 360.142 kb on - strand, within PFLU_RS01600 at 360.278 kb on + strand at 360.341 kb on + strand at 360.342 kb on - strand at 360.374 kb on - strand at 360.374 kb on - strand at 360.374 kb on - strand at 360.374 kb on - strand at 360.374 kb on - strand at 360.374 kb on - strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.524 kb on + strand at 360.525 kb on - strand at 360.525 kb on - strand at 360.525 kb on - strand at 360.525 kb on - strand at 360.525 kb on - strand at 360.525 kb on - strand at 360.525 kb on - strand at 360.525 kb on - strand at 360.525 kb on - strand at 360.525 kb on - strand at 360.525 kb on - strand at 360.525 kb on - strand at 360.525 kb on - strand at 360.536 kb on + strand at 360.536 kb on + strand at 360.536 kb on + strand at 360.536 kb on + strand at 360.537 kb on - strand at 360.537 kb on - strand at 360.537 kb on - strand at 360.537 kb on - strand at 360.560 kb on - strand at 360.560 kb on - strand at 360.596 kb on + strand at 360.596 kb on + strand at 360.596 kb on + strand at 360.597 kb on - strand at 360.597 kb on - strand at 360.597 kb on - strand at 360.651 kb on + strand at 360.652 kb on - strand at 360.652 kb on - strand at 360.652 kb on - strand at 360.652 kb on - strand at 360.652 kb on - strand at 360.652 kb on - strand at 360.743 kb on + strand, within PFLU_RS01605 at 360.743 kb on + strand, within PFLU_RS01605 at 360.744 kb on - strand, within PFLU_RS01605 at 360.744 kb on - strand, within PFLU_RS01605 at 360.802 kb on - strand, within PFLU_RS01605 at 360.854 kb on + strand, within PFLU_RS01605 at 360.854 kb on + strand, within PFLU_RS01605 at 360.854 kb on + strand, within PFLU_RS01605 at 360.854 kb on + strand, within PFLU_RS01605 at 360.855 kb on - strand, within PFLU_RS01605 at 360.855 kb on - strand, within PFLU_RS01605 at 360.855 kb on - strand, within PFLU_RS01605 at 360.855 kb on - strand, within PFLU_RS01605 at 360.855 kb on - strand, within PFLU_RS01605 at 360.855 kb on - strand, within PFLU_RS01605 at 360.855 kb on - strand, within PFLU_RS01605 at 360.855 kb on - strand, within PFLU_RS01605 at 360.855 kb on - strand, within PFLU_RS01605 at 360.928 kb on + strand, within PFLU_RS01605 at 360.928 kb on + strand, within PFLU_RS01605 at 360.928 kb on + strand, within PFLU_RS01605 at 360.929 kb on - strand, within PFLU_RS01605 at 360.929 kb on - strand, within PFLU_RS01605 at 361.006 kb on + strand, within PFLU_RS01605 at 361.007 kb on - strand, within PFLU_RS01605 at 361.179 kb on - strand at 361.232 kb on - strand at 361.232 kb on - strand at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.303 kb on + strand, within PFLU_RS01610 at 361.304 kb on - strand, within PFLU_RS01610 at 361.304 kb on - strand, within PFLU_RS01610 at 361.304 kb on - strand, within PFLU_RS01610 at 361.304 kb on - strand, within PFLU_RS01610 at 361.304 kb on - strand, within PFLU_RS01610 at 361.304 kb on - strand, within PFLU_RS01610 at 361.432 kb on + strand, within PFLU_RS01610 at 361.433 kb on - strand, within PFLU_RS01610 at 361.433 kb on - strand, within PFLU_RS01610 at 361.433 kb on - strand, within PFLU_RS01610 at 361.433 kb on - strand, within PFLU_RS01610 at 361.433 kb on - strand, within PFLU_RS01610 at 361.681 kb on - strand, within PFLU_RS01610 at 361.681 kb on - strand, within PFLU_RS01610 at 361.681 kb on - strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.695 kb on + strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.696 kb on - strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.698 kb on + strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.699 kb on - strand, within PFLU_RS01610 at 361.817 kb on + strand at 361.870 kb on - strand at 361.931 kb on + strand, within PFLU_RS01615 at 362.037 kb on + strand, within PFLU_RS01615 at 362.037 kb on + strand, within PFLU_RS01615 at 362.038 kb on - strand, within PFLU_RS01615 at 362.040 kb on + strand, within PFLU_RS01615 at 362.040 kb on + strand, within PFLU_RS01615 at 362.041 kb on - strand, within PFLU_RS01615 at 362.041 kb on - strand, within PFLU_RS01615 at 362.041 kb on - strand, within PFLU_RS01615 at 362.156 kb on + strand at 362.177 kb on + strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.212 kb on + strand at 362.212 kb on + strand at 362.212 kb on + strand at 362.213 kb on - strand at 362.213 kb on - strand at 362.213 kb on - strand at 362.213 kb on - strand at 362.213 kb on - strand at 362.213 kb on - strand at 362.213 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 359,745 + PFLU_RS01600 0.64 +1.9 359,756 + PFLU_RS01600 0.65 -1.0 359,766 + PFLU_RS01600 0.66 -0.9 359,766 + PFLU_RS01600 0.66 +0.6 359,767 - PFLU_RS01600 0.66 -1.0 359,767 - PFLU_RS01600 0.66 +0.5 359,767 - PFLU_RS01600 0.66 +0.8 359,767 - PFLU_RS01600 0.66 +0.3 359,767 - PFLU_RS01600 0.66 -0.9 359,767 - PFLU_RS01600 0.66 -0.1 359,767 - PFLU_RS01600 0.66 +0.3 359,767 - PFLU_RS01600 0.66 -1.5 359,799 + PFLU_RS01600 0.68 -3.3 359,877 + PFLU_RS01600 0.72 -0.0 359,878 - PFLU_RS01600 0.72 +1.7 359,878 - PFLU_RS01600 0.72 +0.0 359,878 - PFLU_RS01600 0.72 +1.1 359,908 - PFLU_RS01600 0.74 +0.7 360,009 + PFLU_RS01600 0.80 +0.6 360,009 + PFLU_RS01600 0.80 +0.4 360,009 + PFLU_RS01600 0.80 -0.6 360,009 + PFLU_RS01600 0.80 +0.3 360,009 + PFLU_RS01600 0.80 -0.3 360,009 + PFLU_RS01600 0.80 -0.0 360,009 + PFLU_RS01600 0.80 -0.4 360,009 + PFLU_RS01600 0.80 -1.4 360,009 + PFLU_RS01600 0.80 -0.1 360,009 + PFLU_RS01600 0.80 -0.6 360,010 - PFLU_RS01600 0.80 -0.0 360,010 - PFLU_RS01600 0.80 +0.5 360,010 - PFLU_RS01600 0.80 -0.4 360,010 - PFLU_RS01600 0.80 +0.3 360,010 - PFLU_RS01600 0.80 +0.1 360,010 - PFLU_RS01600 0.80 -0.1 360,010 - PFLU_RS01600 0.80 +0.1 360,022 - PFLU_RS01600 0.81 +1.4 360,057 + PFLU_RS01600 0.83 +0.5 360,072 + PFLU_RS01600 0.84 +0.1 360,072 + PFLU_RS01600 0.84 +0.0 360,072 + PFLU_RS01600 0.84 +0.6 360,072 + PFLU_RS01600 0.84 +0.5 360,072 + PFLU_RS01600 0.84 +0.4 360,072 + PFLU_RS01600 0.84 +0.5 360,072 + PFLU_RS01600 0.84 +0.2 360,072 + PFLU_RS01600 0.84 -0.3 360,073 - PFLU_RS01600 0.84 +0.8 360,073 - PFLU_RS01600 0.84 -0.2 360,073 - PFLU_RS01600 0.84 -0.2 360,073 - PFLU_RS01600 0.84 -0.3 360,073 - PFLU_RS01600 0.84 +0.3 360,073 - PFLU_RS01600 0.84 +0.4 360,141 + PFLU_RS01600 0.88 +0.6 360,141 + PFLU_RS01600 0.88 -0.1 360,141 + PFLU_RS01600 0.88 +0.2 360,141 + PFLU_RS01600 0.88 +0.3 360,141 + PFLU_RS01600 0.88 +0.8 360,141 + PFLU_RS01600 0.88 -0.7 360,141 + PFLU_RS01600 0.88 -0.3 360,141 + PFLU_RS01600 0.88 -0.1 360,142 - PFLU_RS01600 0.88 +0.7 360,142 - PFLU_RS01600 0.88 +0.3 360,142 - PFLU_RS01600 0.88 -0.7 360,142 - PFLU_RS01600 0.88 +0.5 360,142 - PFLU_RS01600 0.88 -0.4 360,278 + -0.5 360,341 + -0.3 360,342 - +0.4 360,374 - -0.1 360,374 - -1.5 360,374 - -0.2 360,374 - +0.2 360,374 - +0.1 360,374 - -0.1 360,524 + +0.5 360,524 + -0.2 360,524 + +0.4 360,524 + -0.9 360,524 + +0.0 360,524 + +1.1 360,524 + -0.8 360,524 + +0.0 360,524 + -1.1 360,524 + +0.2 360,524 + +0.5 360,524 + +0.3 360,524 + +0.8 360,524 + -1.2 360,524 + +0.6 360,524 + -0.5 360,524 + +0.3 360,524 + +0.3 360,525 - -0.0 360,525 - +0.2 360,525 - +0.2 360,525 - +0.1 360,525 - -0.1 360,525 - -1.8 360,525 - +0.2 360,525 - +0.4 360,525 - -0.4 360,525 - +0.8 360,525 - -0.1 360,525 - -0.3 360,525 - -0.7 360,536 + -0.0 360,536 + +0.7 360,536 + -1.4 360,536 + -0.1 360,537 - +0.8 360,537 - +1.8 360,537 - -0.3 360,537 - +0.8 360,560 - +0.2 360,560 - -0.7 360,596 + -0.1 360,596 + +1.0 360,596 + +0.6 360,597 - -1.5 360,597 - -1.4 360,597 - -0.6 360,651 + -2.7 360,652 - -1.3 360,652 - -2.7 360,652 - -2.5 360,652 - -3.5 360,652 - -2.5 360,652 - -3.2 360,743 + PFLU_RS01605 0.17 -3.8 360,743 + PFLU_RS01605 0.17 -0.6 360,744 - PFLU_RS01605 0.18 -2.4 360,744 - PFLU_RS01605 0.18 -2.7 360,802 - PFLU_RS01605 0.27 -2.4 360,854 + PFLU_RS01605 0.36 -2.1 360,854 + PFLU_RS01605 0.36 -1.9 360,854 + PFLU_RS01605 0.36 +0.5 360,854 + PFLU_RS01605 0.36 -3.1 360,855 - PFLU_RS01605 0.36 -2.4 360,855 - PFLU_RS01605 0.36 -2.2 360,855 - PFLU_RS01605 0.36 -2.1 360,855 - PFLU_RS01605 0.36 -3.8 360,855 - PFLU_RS01605 0.36 -3.3 360,855 - PFLU_RS01605 0.36 -3.4 360,855 - PFLU_RS01605 0.36 -2.9 360,855 - PFLU_RS01605 0.36 -3.2 360,855 - PFLU_RS01605 0.36 -2.3 360,928 + PFLU_RS01605 0.48 -2.7 360,928 + PFLU_RS01605 0.48 -2.9 360,928 + PFLU_RS01605 0.48 -4.0 360,929 - PFLU_RS01605 0.49 -2.6 360,929 - PFLU_RS01605 0.49 -2.9 361,006 + PFLU_RS01605 0.62 -3.7 361,007 - PFLU_RS01605 0.62 -2.6 361,179 - -2.7 361,232 - -2.7 361,232 - -2.2 361,303 + PFLU_RS01610 0.11 +0.9 361,303 + PFLU_RS01610 0.11 -2.9 361,303 + PFLU_RS01610 0.11 -2.5 361,303 + PFLU_RS01610 0.11 -3.8 361,303 + PFLU_RS01610 0.11 -1.8 361,303 + PFLU_RS01610 0.11 -2.7 361,303 + PFLU_RS01610 0.11 -1.4 361,303 + PFLU_RS01610 0.11 -3.3 361,303 + PFLU_RS01610 0.11 -3.4 361,304 - PFLU_RS01610 0.11 -2.9 361,304 - PFLU_RS01610 0.11 -2.6 361,304 - PFLU_RS01610 0.11 -3.1 361,304 - PFLU_RS01610 0.11 -3.2 361,304 - PFLU_RS01610 0.11 -3.0 361,304 - PFLU_RS01610 0.11 -3.0 361,432 + PFLU_RS01610 0.31 -2.6 361,433 - PFLU_RS01610 0.31 -2.2 361,433 - PFLU_RS01610 0.31 -3.4 361,433 - PFLU_RS01610 0.31 -1.8 361,433 - PFLU_RS01610 0.31 -3.0 361,433 - PFLU_RS01610 0.31 -2.1 361,681 - PFLU_RS01610 0.70 -1.6 361,681 - PFLU_RS01610 0.70 -3.2 361,681 - PFLU_RS01610 0.70 -0.8 361,695 + PFLU_RS01610 0.72 -2.0 361,695 + PFLU_RS01610 0.72 -3.5 361,695 + PFLU_RS01610 0.72 -1.4 361,695 + PFLU_RS01610 0.72 -2.3 361,695 + PFLU_RS01610 0.72 -3.4 361,695 + PFLU_RS01610 0.72 -2.7 361,695 + PFLU_RS01610 0.72 -4.4 361,695 + PFLU_RS01610 0.72 -3.2 361,695 + PFLU_RS01610 0.72 -1.6 361,695 + PFLU_RS01610 0.72 -2.5 361,695 + PFLU_RS01610 0.72 -2.7 361,696 - PFLU_RS01610 0.72 -2.7 361,696 - PFLU_RS01610 0.72 -3.5 361,696 - PFLU_RS01610 0.72 -0.3 361,696 - PFLU_RS01610 0.72 -2.3 361,696 - PFLU_RS01610 0.72 -4.2 361,696 - PFLU_RS01610 0.72 -4.5 361,696 - PFLU_RS01610 0.72 -2.5 361,698 + PFLU_RS01610 0.73 -2.1 361,698 + PFLU_RS01610 0.73 +0.6 361,698 + PFLU_RS01610 0.73 -1.0 361,698 + PFLU_RS01610 0.73 -2.3 361,698 + PFLU_RS01610 0.73 -3.1 361,698 + PFLU_RS01610 0.73 -2.0 361,698 + PFLU_RS01610 0.73 -2.7 361,699 - PFLU_RS01610 0.73 -4.0 361,699 - PFLU_RS01610 0.73 -3.7 361,699 - PFLU_RS01610 0.73 -2.8 361,699 - PFLU_RS01610 0.73 -3.9 361,699 - PFLU_RS01610 0.73 -2.3 361,699 - PFLU_RS01610 0.73 -3.4 361,699 - PFLU_RS01610 0.73 -2.7 361,699 - PFLU_RS01610 0.73 -1.7 361,699 - PFLU_RS01610 0.73 -0.6 361,699 - PFLU_RS01610 0.73 -2.0 361,699 - PFLU_RS01610 0.73 -3.0 361,699 - PFLU_RS01610 0.73 -4.0 361,699 - PFLU_RS01610 0.73 -1.0 361,817 + -3.1 361,870 - -1.5 361,931 + PFLU_RS01615 0.23 -0.8 362,037 + PFLU_RS01615 0.64 -0.3 362,037 + PFLU_RS01615 0.64 -0.4 362,038 - PFLU_RS01615 0.64 -0.7 362,040 + PFLU_RS01615 0.65 -0.6 362,040 + PFLU_RS01615 0.65 -0.5 362,041 - PFLU_RS01615 0.66 -2.1 362,041 - PFLU_RS01615 0.66 -3.2 362,041 - PFLU_RS01615 0.66 -2.1 362,156 + -2.0 362,177 + -2.0 362,178 - -1.5 362,178 - -4.2 362,212 + -1.7 362,212 + -3.6 362,212 + -2.8 362,213 - -3.8 362,213 - -2.3 362,213 - -2.5 362,213 - -1.9 362,213 - -1.6 362,213 - -3.0 362,213 - -3.5
Or see this region's nucleotide sequence