Strain Fitness in Pseudomonas simiae WCS417 around PS417_08695

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08685 and PS417_08690 are separated by 200 nucleotidesPS417_08690 and PS417_08695 overlap by 4 nucleotidesPS417_08695 and PS417_08700 are separated by 83 nucleotidesPS417_08700 and PS417_08705 overlap by 4 nucleotides PS417_08685: PS417_08685 - flagellar hook-length control protein FliK, at 1,893,542 to 1,895,119 _08685 PS417_08690: PS417_08690 - cytochrome C biogenesis protein CcmA, at 1,895,320 to 1,895,955 _08690 PS417_08695: PS417_08695 - heme transporter, at 1,895,952 to 1,896,620 _08695 PS417_08700: PS417_08700 - heme ABC transporter permease, at 1,896,704 to 1,897,459 _08700 PS417_08705: PS417_08705 - hemagglutination activity protein, at 1,897,456 to 1,897,632 _08705 Position (kb) 1895 1896 1897Strain fitness (log2 ratio) -2 -1 0 1 2at 1895.095 kb on + strandat 1895.158 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.172 kb on + strandat 1895.173 kb on - strandat 1895.173 kb on - strandat 1895.217 kb on + strandat 1895.217 kb on + strandat 1895.218 kb on - strandat 1895.256 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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1,895,095 + -0.4
1,895,158 + +0.4
1,895,172 + +0.5
1,895,172 + +0.6
1,895,172 + -0.4
1,895,172 + +1.1
1,895,172 + -0.2
1,895,172 + +0.9
1,895,172 + -0.2
1,895,172 + +1.9
1,895,172 + +0.6
1,895,172 + -0.6
1,895,173 - -2.2
1,895,173 - +0.4
1,895,217 + -0.0
1,895,217 + +0.6
1,895,218 - -0.7
1,895,256 + +2.2

Or see this region's nucleotide sequence