Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08685 and PS417_08690 are separated by 200 nucleotides PS417_08690 and PS417_08695 overlap by 4 nucleotides PS417_08695 and PS417_08700 are separated by 83 nucleotides PS417_08700 and PS417_08705 overlap by 4 nucleotides
PS417_08685: PS417_08685 - flagellar hook-length control protein FliK, at 1,893,542 to 1,895,119
_08685
PS417_08690: PS417_08690 - cytochrome C biogenesis protein CcmA, at 1,895,320 to 1,895,955
_08690
PS417_08695: PS417_08695 - heme transporter, at 1,895,952 to 1,896,620
_08695
PS417_08700: PS417_08700 - heme ABC transporter permease, at 1,896,704 to 1,897,459
_08700
PS417_08705: PS417_08705 - hemagglutination activity protein, at 1,897,456 to 1,897,632
_08705
Position (kb)
1895
1896
1897 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1895.095 kb on + strand at 1895.158 kb on + strand at 1895.172 kb on + strand at 1895.172 kb on + strand at 1895.172 kb on + strand at 1895.172 kb on + strand at 1895.172 kb on + strand at 1895.172 kb on + strand at 1895.172 kb on + strand at 1895.172 kb on + strand at 1895.172 kb on + strand at 1895.172 kb on + strand at 1895.173 kb on - strand at 1895.173 kb on - strand at 1895.217 kb on + strand at 1895.217 kb on + strand at 1895.218 kb on - strand at 1895.256 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 1,895,095 + -0.4 1,895,158 + +0.4 1,895,172 + +0.5 1,895,172 + +0.6 1,895,172 + -0.4 1,895,172 + +1.1 1,895,172 + -0.2 1,895,172 + +0.9 1,895,172 + -0.2 1,895,172 + +1.9 1,895,172 + +0.6 1,895,172 + -0.6 1,895,173 - -2.2 1,895,173 - +0.4 1,895,217 + -0.0 1,895,217 + +0.6 1,895,218 - -0.7 1,895,256 + +2.2
Or see this region's nucleotide sequence