Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS19010

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
4,299,461	+		PFLU_RS19005	0.27	-0.4
4,299,461	+		PFLU_RS19005	0.27	+1.2
4,299,461	+		PFLU_RS19005	0.27	+0.8
4,299,461	+		PFLU_RS19005	0.27	+0.3
4,299,461	+		PFLU_RS19005	0.27	-0.7
4,299,461	+		PFLU_RS19005	0.27	+1.6
4,299,462	-		PFLU_RS19005	0.27	+0.5
4,299,462	-		PFLU_RS19005	0.27	+0.5
4,299,462	-		PFLU_RS19005	0.27	+0.6
4,299,462	-		PFLU_RS19005	0.27	+0.3
4,299,462	-		PFLU_RS19005	0.27	+0.6
4,299,616	-		PFLU_RS19005	0.41	-0.2
4,299,636	+		PFLU_RS19005	0.43	-0.1
4,299,636	+		PFLU_RS19005	0.43	+1.0
4,299,637	-		PFLU_RS19005	0.43	-0.8
4,299,637	-		PFLU_RS19005	0.43	+0.4
4,299,637	-		PFLU_RS19005	0.43	-0.2
4,299,651	+		PFLU_RS19005	0.44	-0.4
4,299,651	+		PFLU_RS19005	0.44	+0.4
4,299,651	+		PFLU_RS19005	0.44	+0.6
4,299,651	+		PFLU_RS19005	0.44	-0.6
4,299,731	-		PFLU_RS19005	0.52	-0.4
4,299,789	+		PFLU_RS19005	0.57	+0.7
4,299,789	+		PFLU_RS19005	0.57	-2.3
4,299,790	-		PFLU_RS19005	0.57	+0.8
4,299,790	-		PFLU_RS19005	0.57	+0.3
4,299,896	+		PFLU_RS19005	0.67	-0.7
4,299,896	+		PFLU_RS19005	0.67	-0.3
4,299,915	+		PFLU_RS19005	0.69	+0.2
4,299,916	-		PFLU_RS19005	0.69	-0.8
4,299,991	-		PFLU_RS19005	0.76	-0.9
4,300,020	+		PFLU_RS19005	0.78	+0.9
4,300,051	+		PFLU_RS19005	0.81	-0.8
4,300,051	+		PFLU_RS19005	0.81	+0.5
4,300,052	-		PFLU_RS19005	0.81	+0.6
4,300,052	-		PFLU_RS19005	0.81	-0.4
4,300,146	+		PFLU_RS19005	0.90	+0.2
4,300,250	+				+0.2
4,300,250	+				-0.7
4,300,250	+				+1.1
4,300,250	+				+0.8
4,300,250	+				+0.9
4,300,250	+				+0.5
4,300,250	+				+0.5
4,300,250	+				+0.1
4,300,250	+				-0.2
4,300,251	-				+0.9
4,300,251	-				+0.3
4,300,251	-				+0.1
4,300,251	-				+0.6
4,300,251	-				+0.4
4,300,251	-				+0.2
4,300,251	-				-0.1
4,300,293	+				+1.1
4,300,293	+				-0.9
4,300,293	+				+0.3
4,300,293	+				+0.8
4,300,293	+				+0.1
4,300,293	+				+0.7
4,300,293	+				-0.1
4,300,293	+				-0.2
4,300,293	+				+0.6
4,300,293	+				-1.3
4,300,293	+				+0.7
4,300,293	+				+1.3
4,300,293	+				-0.9
4,300,293	+				-0.4
4,300,293	+				+0.4
4,300,293	+				-0.4
4,300,293	+				+0.3
4,300,294	-				+0.0
4,300,294	-				+0.4
4,300,294	-				-0.1
4,300,294	-				+0.2
4,300,294	-				+0.3
4,300,294	-				+0.8
4,300,294	-				-1.0
4,300,294	-				+0.6
4,300,294	-				-1.2
4,300,294	-				+0.3
4,300,294	-				+0.9
4,300,294	-				+0.6
4,300,294	-				-1.6
4,300,294	-				+0.1
4,300,294	-				+2.0
4,300,307	+				+0.5
4,300,308	-				+0.1
4,300,308	-				-0.4
4,300,329	+				+0.6
4,300,329	+				+0.2
4,300,330	-				+0.8
4,300,348	+				+0.4
4,300,348	+				+1.2
4,300,349	-				+0.4
4,300,349	-				+0.4
4,300,368	-				-0.1
4,300,368	-				-0.6
4,300,392	+				-0.1
4,300,393	-				-0.4
4,300,404	-				-0.7
4,300,445	+				+0.8
4,300,445	+				-0.5
4,300,445	+				+0.4
4,300,446	-				+0.2
4,300,645	+		PFLU_RS19010	0.44	+0.4
4,300,798	+		PFLU_RS19010	0.74	+0.3
4,300,798	+		PFLU_RS19010	0.74	+0.3
4,300,799	-		PFLU_RS19010	0.74	+0.2
4,300,965	+				-1.0
4,300,965	+				-0.3
4,300,965	+				-0.8
4,300,965	+				-0.3
4,300,965	+				+0.0
4,300,965	+				-0.4
4,300,966	-				+0.2
4,300,966	-				+1.1
4,300,966	-				-0.6
4,300,966	-				+0.5
4,301,013	+		PFLU_RS19015	0.12	+0.0
4,301,013	+		PFLU_RS19015	0.12	-0.5
4,301,013	+		PFLU_RS19015	0.12	+0.9
4,301,014	-		PFLU_RS19015	0.12	-0.8
4,301,014	-		PFLU_RS19015	0.12	-0.5
4,301,014	-		PFLU_RS19015	0.12	+0.5
4,301,014	-		PFLU_RS19015	0.12	-1.7
4,301,014	-		PFLU_RS19015	0.12	-1.9
4,301,014	-		PFLU_RS19015	0.12	-0.3
4,301,014	-		PFLU_RS19015	0.12	-0.2
4,301,328	+		PFLU_RS19015	0.54	-0.1
4,301,328	+		PFLU_RS19015	0.54	-0.5
4,301,328	+		PFLU_RS19015	0.54	-0.2
4,301,328	+		PFLU_RS19015	0.54	+0.2
4,301,328	+		PFLU_RS19015	0.54	-2.6
4,301,329	-		PFLU_RS19015	0.55	+0.1
4,301,329	-		PFLU_RS19015	0.55	+0.5
4,301,329	-		PFLU_RS19015	0.55	-0.1
4,301,329	-		PFLU_RS19015	0.55	+1.2
4,301,329	-		PFLU_RS19015	0.55	-0.6
4,301,444	+		PFLU_RS19015	0.70	+0.1
4,301,444	+		PFLU_RS19015	0.70	-1.7
4,301,479	-		PFLU_RS19015	0.75	-0.3
4,301,479	-		PFLU_RS19015	0.75	+0.0
4,301,479	-		PFLU_RS19015	0.75	-0.9
4,301,479	-		PFLU_RS19015	0.75	-1.3
4,301,479	-		PFLU_RS19015	0.75	-1.3
4,301,479	-		PFLU_RS19015	0.75	+0.4
4,301,479	-		PFLU_RS19015	0.75	-1.1
4,301,511	+		PFLU_RS19015	0.79	+1.1
4,301,511	+		PFLU_RS19015	0.79	-0.1
4,301,511	+		PFLU_RS19015	0.79	+0.5
4,301,511	+		PFLU_RS19015	0.79	-1.7
4,301,512	-		PFLU_RS19015	0.79	-0.3
4,301,512	-		PFLU_RS19015	0.79	-0.7
4,301,512	-		PFLU_RS19015	0.79	-0.8
4,301,586	+		PFLU_RS19015	0.89	+0.4
4,301,586	+		PFLU_RS19015	0.89	-1.3
4,301,586	+		PFLU_RS19015	0.89	+1.9
4,301,605	-				+0.4
4,301,610	+				-0.5
4,301,610	+				-1.0
4,301,610	+				+0.6
4,301,610	+				+0.6
4,301,610	+				+0.5
4,301,610	+				+0.3
4,301,610	+				-0.0
4,301,610	+				+1.2
4,301,610	+				+0.8
4,301,610	+				-0.8
4,301,610	+				+0.2
4,301,610	+				+0.4
4,301,610	+				-0.0
4,301,610	+				-0.9
4,301,611	-				+1.3
4,301,611	-				+0.0
4,301,611	-				+0.5
4,301,611	-				+0.7
4,301,661	+				+0.3
4,301,662	-				-0.0
4,301,662	-				+0.5
4,301,694	+				+1.1
4,301,694	+				-0.1
4,301,694	+				-0.1
4,301,694	+				+1.1
4,301,694	+				-0.2
4,301,694	+				+0.7
4,301,694	+				+0.2
4,301,695	-				+0.1
4,301,695	-				-0.8
4,301,695	-				+0.0
4,301,695	-				-0.2
4,301,695	-				+0.0
4,301,695	-				+0.7
4,301,695	-				-0.3
4,301,727	+				-0.0
4,301,728	-				-0.6
4,301,742	+				+0.4
4,301,742	+				+0.2
4,301,742	+				+0.7
4,301,742	+				-0.1
4,301,742	+				+0.9
4,301,743	-				-0.3
4,301,743	-				+0.6
4,301,743	-				+0.6
4,301,743	-				-0.3
4,301,743	-				-1.0
4,301,860	+		PFLU_RS19020	0.22	-1.7
4,301,860	+		PFLU_RS19020	0.22	+0.9
4,301,861	-		PFLU_RS19020	0.22	+0.0
4,301,874	+		PFLU_RS19020	0.23	+0.4
4,301,874	+		PFLU_RS19020	0.23	+0.4
4,301,875	-		PFLU_RS19020	0.23	+0.1
4,301,875	-		PFLU_RS19020	0.23	+0.4
4,301,875	-		PFLU_RS19020	0.23	+0.5
4,301,875	-		PFLU_RS19020	0.23	+0.2
4,301,875	-		PFLU_RS19020	0.23	+0.9
4,301,875	-		PFLU_RS19020	0.23	+0.2
4,301,875	-		PFLU_RS19020	0.23	+0.2