Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18410 and PFLU_RS18415 are separated by 91 nucleotides PFLU_RS18415 and PFLU_RS18420 are separated by 71 nucleotides PFLU_RS18420 and PFLU_RS18425 overlap by 4 nucleotides PFLU_RS18425 and PFLU_RS18430 are separated by 79 nucleotides
PFLU_RS18410: PFLU_RS18410 - response regulator, at 4,172,520 to 4,175,273
_RS18410
PFLU_RS18415: PFLU_RS18415 - 2-hydroxyacid dehydrogenase, at 4,175,365 to 4,176,354
_RS18415
PFLU_RS18420: PFLU_RS18420 - hypothetical protein, at 4,176,426 to 4,176,866
_RS18420
PFLU_RS18425: PFLU_RS18425 - META domain-containing protein, at 4,176,863 to 4,177,267
_RS18425
PFLU_RS18430: PFLU_RS18430 - TlpA family protein disulfide reductase, at 4,177,347 to 4,177,808
_RS18430
Position (kb) 4175
4176
4177 Strain fitness (log2 ratio) -2
-1
0
1 at 4174.824 kb on + strand, within PFLU_RS18410 at 4174.824 kb on + strand, within PFLU_RS18410 at 4175.010 kb on - strand at 4175.275 kb on + strand at 4175.275 kb on + strand at 4175.276 kb on - strand at 4175.283 kb on - strand at 4175.345 kb on + strand at 4175.345 kb on + strand at 4175.345 kb on + strand at 4175.345 kb on + strand at 4175.346 kb on - strand at 4175.395 kb on + strand at 4175.599 kb on + strand, within PFLU_RS18415 at 4175.599 kb on + strand, within PFLU_RS18415 at 4175.600 kb on - strand, within PFLU_RS18415 at 4175.600 kb on - strand, within PFLU_RS18415 at 4175.600 kb on - strand, within PFLU_RS18415 at 4175.662 kb on + strand, within PFLU_RS18415 at 4175.734 kb on + strand, within PFLU_RS18415 at 4175.734 kb on + strand, within PFLU_RS18415 at 4175.735 kb on - strand, within PFLU_RS18415 at 4175.926 kb on + strand, within PFLU_RS18415 at 4175.931 kb on - strand, within PFLU_RS18415 at 4175.931 kb on - strand, within PFLU_RS18415 at 4176.142 kb on + strand, within PFLU_RS18415 at 4176.142 kb on + strand, within PFLU_RS18415 at 4176.142 kb on + strand, within PFLU_RS18415 at 4176.142 kb on + strand, within PFLU_RS18415 at 4176.142 kb on + strand, within PFLU_RS18415 at 4176.143 kb on - strand, within PFLU_RS18415 at 4176.143 kb on - strand, within PFLU_RS18415 at 4176.143 kb on - strand, within PFLU_RS18415 at 4176.143 kb on - strand, within PFLU_RS18415 at 4176.143 kb on - strand, within PFLU_RS18415 at 4176.367 kb on + strand at 4176.367 kb on + strand at 4176.367 kb on + strand at 4176.367 kb on + strand at 4176.367 kb on + strand at 4176.368 kb on - strand at 4176.368 kb on - strand at 4176.368 kb on - strand at 4176.368 kb on - strand at 4176.368 kb on - strand at 4176.368 kb on - strand at 4176.368 kb on - strand at 4176.368 kb on - strand at 4176.368 kb on - strand at 4176.368 kb on - strand at 4176.398 kb on + strand at 4176.398 kb on + strand at 4176.398 kb on + strand at 4176.398 kb on + strand at 4176.398 kb on + strand at 4176.399 kb on - strand at 4176.412 kb on + strand at 4176.412 kb on + strand at 4176.413 kb on - strand at 4176.576 kb on - strand, within PFLU_RS18420 at 4176.842 kb on + strand at 4176.842 kb on + strand at 4176.842 kb on + strand at 4176.950 kb on + strand, within PFLU_RS18425 at 4176.950 kb on + strand, within PFLU_RS18425 at 4176.950 kb on + strand, within PFLU_RS18425 at 4176.950 kb on + strand, within PFLU_RS18425 at 4176.950 kb on + strand, within PFLU_RS18425 at 4176.950 kb on + strand, within PFLU_RS18425 at 4176.950 kb on + strand, within PFLU_RS18425 at 4176.950 kb on + strand, within PFLU_RS18425 at 4176.950 kb on + strand, within PFLU_RS18425 at 4176.951 kb on - strand, within PFLU_RS18425 at 4176.951 kb on - strand, within PFLU_RS18425 at 4176.951 kb on - strand, within PFLU_RS18425 at 4176.951 kb on - strand, within PFLU_RS18425 at 4176.951 kb on - strand, within PFLU_RS18425 at 4177.067 kb on + strand, within PFLU_RS18425 at 4177.280 kb on - strand at 4177.280 kb on - strand at 4177.280 kb on - strand at 4177.280 kb on - strand at 4177.280 kb on - strand at 4177.280 kb on - strand at 4177.280 kb on - strand at 4177.296 kb on + strand at 4177.296 kb on + strand at 4177.296 kb on + strand at 4177.297 kb on - strand at 4177.297 kb on - strand at 4177.297 kb on - strand at 4177.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,174,824 + PFLU_RS18410 0.84 +1.7 4,174,824 + PFLU_RS18410 0.84 +0.2 4,175,010 - +0.7 4,175,275 + -1.2 4,175,275 + +0.0 4,175,276 - +0.0 4,175,283 - -0.1 4,175,345 + +0.7 4,175,345 + +1.1 4,175,345 + +0.6 4,175,345 + +0.4 4,175,346 - +0.2 4,175,395 + +0.3 4,175,599 + PFLU_RS18415 0.24 -0.3 4,175,599 + PFLU_RS18415 0.24 -0.8 4,175,600 - PFLU_RS18415 0.24 +0.4 4,175,600 - PFLU_RS18415 0.24 -0.1 4,175,600 - PFLU_RS18415 0.24 +1.2 4,175,662 + PFLU_RS18415 0.30 -0.8 4,175,734 + PFLU_RS18415 0.37 +0.6 4,175,734 + PFLU_RS18415 0.37 -0.4 4,175,735 - PFLU_RS18415 0.37 -0.2 4,175,926 + PFLU_RS18415 0.57 +0.3 4,175,931 - PFLU_RS18415 0.57 +0.1 4,175,931 - PFLU_RS18415 0.57 -0.8 4,176,142 + PFLU_RS18415 0.78 +0.6 4,176,142 + PFLU_RS18415 0.78 -0.6 4,176,142 + PFLU_RS18415 0.78 -1.1 4,176,142 + PFLU_RS18415 0.78 +0.5 4,176,142 + PFLU_RS18415 0.78 +0.1 4,176,143 - PFLU_RS18415 0.79 -0.5 4,176,143 - PFLU_RS18415 0.79 +0.9 4,176,143 - PFLU_RS18415 0.79 -1.4 4,176,143 - PFLU_RS18415 0.79 -0.4 4,176,143 - PFLU_RS18415 0.79 +1.0 4,176,367 + -0.8 4,176,367 + +0.3 4,176,367 + +1.0 4,176,367 + -0.3 4,176,367 + +0.2 4,176,368 - +1.2 4,176,368 - -0.5 4,176,368 - -0.0 4,176,368 - -0.1 4,176,368 - +0.6 4,176,368 - -1.0 4,176,368 - +0.2 4,176,368 - +0.3 4,176,368 - -1.1 4,176,368 - -0.2 4,176,398 + -0.3 4,176,398 + +1.2 4,176,398 + +0.6 4,176,398 + -0.7 4,176,398 + -1.6 4,176,399 - +0.0 4,176,412 + -0.5 4,176,412 + -0.1 4,176,413 - -0.0 4,176,576 - PFLU_RS18420 0.34 +0.4 4,176,842 + -0.3 4,176,842 + -0.0 4,176,842 + +0.4 4,176,950 + PFLU_RS18425 0.21 -0.3 4,176,950 + PFLU_RS18425 0.21 +0.1 4,176,950 + PFLU_RS18425 0.21 -2.0 4,176,950 + PFLU_RS18425 0.21 -0.3 4,176,950 + PFLU_RS18425 0.21 -0.7 4,176,950 + PFLU_RS18425 0.21 +1.1 4,176,950 + PFLU_RS18425 0.21 +1.7 4,176,950 + PFLU_RS18425 0.21 +0.4 4,176,950 + PFLU_RS18425 0.21 +0.3 4,176,951 - PFLU_RS18425 0.22 +0.3 4,176,951 - PFLU_RS18425 0.22 -0.5 4,176,951 - PFLU_RS18425 0.22 +0.4 4,176,951 - PFLU_RS18425 0.22 -0.0 4,176,951 - PFLU_RS18425 0.22 +0.3 4,177,067 + PFLU_RS18425 0.50 -2.3 4,177,280 - +0.3 4,177,280 - -0.5 4,177,280 - +0.6 4,177,280 - -1.1 4,177,280 - +1.2 4,177,280 - +0.1 4,177,280 - +0.6 4,177,296 + +0.9 4,177,296 + +1.0 4,177,296 + +1.0 4,177,297 - +0.3 4,177,297 - -0.5 4,177,297 - +0.1 4,177,297 - -0.1
Or see this region's nucleotide sequence