Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS17280

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
3,929,007	+		PFLU_RS17270	0.68	+0.7
3,929,008	-		PFLU_RS17270	0.69	+0.5
3,929,008	-		PFLU_RS17270	0.69	+0.3
3,929,074	+		PFLU_RS17270	0.76	-1.4
3,929,074	+		PFLU_RS17270	0.76	+0.4
3,929,075	-		PFLU_RS17270	0.76	+0.0
3,929,075	-		PFLU_RS17270	0.76	+0.5
3,929,082	+		PFLU_RS17270	0.77	-0.2
3,929,082	+		PFLU_RS17270	0.77	-0.0
3,929,082	+		PFLU_RS17270	0.77	+0.6
3,929,082	+		PFLU_RS17270	0.77	+0.2
3,929,082	+		PFLU_RS17270	0.77	+0.2
3,929,082	+		PFLU_RS17270	0.77	-0.2
3,929,083	-		PFLU_RS17270	0.77	-0.1
3,929,083	-		PFLU_RS17270	0.77	-0.9
3,929,083	-		PFLU_RS17270	0.77	+0.6
3,929,083	-		PFLU_RS17270	0.77	-0.6
3,929,407	-		PFLU_RS17275	0.18	+0.2
3,929,558	-		PFLU_RS17275	0.39	-0.1
3,929,558	-		PFLU_RS17275	0.39	+0.0
3,929,625	+		PFLU_RS17275	0.48	-2.0
3,929,625	+		PFLU_RS17275	0.48	+0.2
3,929,625	+		PFLU_RS17275	0.48	-0.5
3,929,625	+		PFLU_RS17275	0.48	+0.4
3,929,625	+		PFLU_RS17275	0.48	+0.9
3,929,626	-		PFLU_RS17275	0.48	+0.5
3,929,650	+		PFLU_RS17275	0.51	+0.3
3,929,675	+		PFLU_RS17275	0.54	-0.1
3,929,676	-		PFLU_RS17275	0.55	+0.4
3,929,681	+		PFLU_RS17275	0.55	-0.2
3,929,681	+		PFLU_RS17275	0.55	+0.2
3,929,681	+		PFLU_RS17275	0.55	-0.5
3,929,681	+		PFLU_RS17275	0.55	-0.1
3,929,681	+		PFLU_RS17275	0.55	+0.8
3,929,681	+		PFLU_RS17275	0.55	+0.8
3,929,681	+		PFLU_RS17275	0.55	+0.1
3,929,681	+		PFLU_RS17275	0.55	+0.2
3,929,681	+		PFLU_RS17275	0.55	+1.0
3,929,682	-		PFLU_RS17275	0.55	+0.4
3,929,682	-		PFLU_RS17275	0.55	-1.5
3,929,682	-		PFLU_RS17275	0.55	-0.4
3,929,682	-		PFLU_RS17275	0.55	+0.2
3,929,682	-		PFLU_RS17275	0.55	+0.9
3,929,693	-		PFLU_RS17275	0.57	-0.5
3,930,059	+				-0.5
3,930,059	+				-0.8
3,930,060	-				+0.9
3,930,063	+				+1.0
3,930,063	+				+0.0
3,930,063	+				+0.9
3,930,063	+				+0.5
3,930,064	-				-0.8
3,930,064	-				-0.2
3,930,064	-				+0.1
3,930,064	-				-0.3
3,930,094	+				+0.4
3,930,095	-				+0.2
3,930,095	-				+0.1
3,930,095	-				+0.7
3,930,095	-				-1.0
3,930,342	+		PFLU_RS17280	0.16	+0.7
3,930,344	+		PFLU_RS17280	0.16	-0.3
3,930,357	+		PFLU_RS17280	0.16	-0.8
3,930,358	-		PFLU_RS17280	0.17	-0.5
3,930,530	+		PFLU_RS17280	0.24	-0.8
3,930,639	+		PFLU_RS17280	0.29	+0.9
3,930,639	+		PFLU_RS17280	0.29	+0.2
3,930,639	+		PFLU_RS17280	0.29	-0.1
3,930,641	+		PFLU_RS17280	0.29	+0.3
3,930,641	+		PFLU_RS17280	0.29	+0.0
3,930,642	-		PFLU_RS17280	0.29	-0.2
3,930,642	-		PFLU_RS17280	0.29	-0.1
3,930,642	-		PFLU_RS17280	0.29	+0.2
3,930,650	+		PFLU_RS17280	0.29	+0.7
3,930,680	+		PFLU_RS17280	0.31	-0.8
3,930,680	+		PFLU_RS17280	0.31	-0.1
3,930,686	+		PFLU_RS17280	0.31	-0.5
3,930,687	-		PFLU_RS17280	0.31	+0.6
3,930,727	-		PFLU_RS17280	0.33	-0.4
3,930,790	+		PFLU_RS17280	0.35	+0.5
3,930,881	+		PFLU_RS17280	0.39	+0.7
3,930,882	-		PFLU_RS17280	0.39	+0.8
3,930,882	-		PFLU_RS17280	0.39	+0.8
3,931,132	+		PFLU_RS17280	0.50	-0.9
3,931,132	+		PFLU_RS17280	0.50	+1.2
3,931,132	+		PFLU_RS17280	0.50	-1.8
3,931,132	+		PFLU_RS17280	0.50	-0.0
3,931,132	+		PFLU_RS17280	0.50	+0.5
3,931,132	+		PFLU_RS17280	0.50	+0.8
3,931,133	-		PFLU_RS17280	0.50	+1.5
3,931,133	-		PFLU_RS17280	0.50	+0.6
3,931,133	-		PFLU_RS17280	0.50	-0.9
3,931,133	-		PFLU_RS17280	0.50	+0.9
3,931,133	-		PFLU_RS17280	0.50	+1.8
3,931,160	+		PFLU_RS17280	0.52	-1.0
3,931,160	+		PFLU_RS17280	0.52	+0.3
3,931,160	+		PFLU_RS17280	0.52	-0.5
3,931,182	+		PFLU_RS17280	0.53	-0.3
3,931,182	+		PFLU_RS17280	0.53	-3.2
3,931,183	-		PFLU_RS17280	0.53	+0.3
3,931,375	-		PFLU_RS17280	0.61	+0.6
3,931,490	-		PFLU_RS17280	0.66	-0.7
3,931,693	+		PFLU_RS17280	0.75	+0.4
3,931,694	-		PFLU_RS17280	0.75	+0.9
3,931,718	+		PFLU_RS17280	0.76	+1.6
3,931,772	+		PFLU_RS17280	0.78	+0.3
3,931,773	-		PFLU_RS17280	0.78	+0.9
3,931,783	-		PFLU_RS17280	0.79	-0.2
3,931,880	+		PFLU_RS17280	0.83	+0.9
3,931,881	-		PFLU_RS17280	0.83	+0.0
3,931,972	+		PFLU_RS17280	0.87	+0.1
3,931,973	-		PFLU_RS17280	0.87	+0.6
3,931,981	+		PFLU_RS17280	0.87	+0.3
3,931,981	+		PFLU_RS17280	0.87	-0.3
3,931,982	-		PFLU_RS17280	0.87	+0.8
3,932,191	-				+0.0
3,932,268	+				+0.8
3,932,268	+				-0.6
3,932,269	-				+0.7
3,932,269	-				+1.1
3,932,272	+				+1.2
3,932,272	+				-0.0
3,932,273	-				+0.1
3,932,273	-				+0.5
3,932,273	-				-0.2
3,932,285	+				-0.0
3,932,285	+				-0.1
3,932,286	-				+0.4
3,932,378	+		PFLU_RS17285	0.13	-0.3
3,932,379	-		PFLU_RS17285	0.13	+0.5
3,932,379	-		PFLU_RS17285	0.13	+0.5
3,932,379	-		PFLU_RS17285	0.13	+0.9
3,932,379	-		PFLU_RS17285	0.13	+0.4
3,932,379	-		PFLU_RS17285	0.13	+0.4
3,932,379	-		PFLU_RS17285	0.13	+0.6
3,932,401	+		PFLU_RS17285	0.16	-0.9
3,932,519	+		PFLU_RS17285	0.32	+0.6
3,932,519	+		PFLU_RS17285	0.32	-0.0
3,932,573	+		PFLU_RS17285	0.39	+0.4
3,932,577	+		PFLU_RS17285	0.40	+0.2
3,932,578	-		PFLU_RS17285	0.40	+0.2
3,932,606	+		PFLU_RS17285	0.44	-1.1
3,932,606	+		PFLU_RS17285	0.44	+1.5
3,932,606	+		PFLU_RS17285	0.44	+0.5
3,932,606	+		PFLU_RS17285	0.44	+0.2
3,932,606	+		PFLU_RS17285	0.44	-0.6
3,932,606	+		PFLU_RS17285	0.44	+0.2
3,932,606	+		PFLU_RS17285	0.44	+0.5
3,932,606	+		PFLU_RS17285	0.44	+0.2
3,932,606	+		PFLU_RS17285	0.44	+0.1
3,932,606	+		PFLU_RS17285	0.44	-0.0
3,932,606	+		PFLU_RS17285	0.44	-0.1
3,932,606	+		PFLU_RS17285	0.44	+0.0
3,932,607	-		PFLU_RS17285	0.44	-0.4
3,932,607	-		PFLU_RS17285	0.44	+0.4
3,932,607	-		PFLU_RS17285	0.44	+0.1
3,932,607	-		PFLU_RS17285	0.44	+0.8
3,932,607	-		PFLU_RS17285	0.44	+0.7
3,932,607	-		PFLU_RS17285	0.44	+1.1
3,932,607	-		PFLU_RS17285	0.44	+0.7
3,932,607	-		PFLU_RS17285	0.44	+1.7
3,932,607	-		PFLU_RS17285	0.44	-0.1
3,932,607	-		PFLU_RS17285	0.44	+0.5
3,932,607	-		PFLU_RS17285	0.44	+0.4
3,932,607	-		PFLU_RS17285	0.44	-0.2
3,932,607	-		PFLU_RS17285	0.44	+0.1
3,932,607	-		PFLU_RS17285	0.44	+0.9
3,932,607	-		PFLU_RS17285	0.44	+0.9
3,932,610	+		PFLU_RS17285	0.44	+0.8
3,932,610	+		PFLU_RS17285	0.44	-0.4
3,932,610	+		PFLU_RS17285	0.44	-0.6
3,932,610	+		PFLU_RS17285	0.44	+1.0
3,932,610	+		PFLU_RS17285	0.44	+0.5
3,932,610	+		PFLU_RS17285	0.44	+0.3
3,932,610	+		PFLU_RS17285	0.44	-0.1
3,932,610	+		PFLU_RS17285	0.44	-0.0
3,932,611	-		PFLU_RS17285	0.44	-0.2
3,932,611	-		PFLU_RS17285	0.44	+0.0
3,932,611	-		PFLU_RS17285	0.44	+0.6
3,932,611	-		PFLU_RS17285	0.44	-1.0
3,932,611	-		PFLU_RS17285	0.44	+0.4
3,932,737	-		PFLU_RS17285	0.62	-1.6
3,932,792	+		PFLU_RS17285	0.69	+0.1
3,932,792	+		PFLU_RS17285	0.69	-1.0
3,932,793	-		PFLU_RS17285	0.69	-0.0
3,932,821	+		PFLU_RS17285	0.73	-0.2
3,932,959	+				+0.2
3,932,960	-				-0.3
3,932,965	-				-0.4
3,933,011	+				-1.0
3,933,011	+				+0.6
3,933,011	+				+0.3
3,933,011	+				+0.9
3,933,011	+				-0.2
3,933,011	+				+0.6
3,933,012	-				-0.9
3,933,012	-				-0.2
3,933,057	-				+0.6
3,933,141	+		PFLU_RS30880	0.26	+0.5