Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02850 and PFLU_RS02855 are separated by 152 nucleotides PFLU_RS02855 and PFLU_RS02860 are separated by 116 nucleotides PFLU_RS02860 and PFLU_RS02865 overlap by 4 nucleotides PFLU_RS02865 and PFLU_RS02870 are separated by 5 nucleotides
PFLU_RS02850: PFLU_RS02850 - hypothetical protein, at 654,775 to 656,700
_RS02850
PFLU_RS02855: PFLU_RS02855 - urease subunit alpha, at 656,853 to 658,553
_RS02855
PFLU_RS02860: PFLU_RS02860 - urease subunit beta, at 658,670 to 658,975
_RS02860
PFLU_RS02865: PFLU_RS02865 - GNAT family N-acetyltransferase, at 658,972 to 659,505
_RS02865
PFLU_RS02870: PFLU_RS02870 - N-acetyltransferase, at 659,511 to 660,023
_RS02870
Position (kb) 656
657
658
659 Strain fitness (log2 ratio) -1
0
1 at 655.948 kb on + strand, within PFLU_RS02850 at 655.948 kb on + strand, within PFLU_RS02850 at 655.948 kb on + strand, within PFLU_RS02850 at 656.054 kb on + strand, within PFLU_RS02850 at 656.054 kb on + strand, within PFLU_RS02850 at 656.054 kb on + strand, within PFLU_RS02850 at 656.055 kb on - strand, within PFLU_RS02850 at 656.055 kb on - strand, within PFLU_RS02850 at 656.055 kb on - strand, within PFLU_RS02850 at 656.073 kb on + strand, within PFLU_RS02850 at 656.073 kb on + strand, within PFLU_RS02850 at 656.073 kb on + strand, within PFLU_RS02850 at 656.076 kb on + strand, within PFLU_RS02850 at 656.076 kb on + strand, within PFLU_RS02850 at 656.076 kb on + strand, within PFLU_RS02850 at 656.076 kb on + strand, within PFLU_RS02850 at 656.076 kb on + strand, within PFLU_RS02850 at 656.076 kb on + strand, within PFLU_RS02850 at 656.076 kb on + strand, within PFLU_RS02850 at 656.077 kb on - strand, within PFLU_RS02850 at 656.077 kb on - strand, within PFLU_RS02850 at 656.077 kb on - strand, within PFLU_RS02850 at 656.077 kb on - strand, within PFLU_RS02850 at 656.208 kb on + strand, within PFLU_RS02850 at 656.209 kb on - strand, within PFLU_RS02850 at 656.380 kb on + strand, within PFLU_RS02850 at 656.467 kb on - strand, within PFLU_RS02850 at 656.504 kb on + strand, within PFLU_RS02850 at 656.716 kb on + strand at 656.716 kb on + strand at 656.716 kb on + strand at 656.716 kb on + strand at 656.716 kb on + strand at 656.716 kb on + strand at 656.716 kb on + strand at 656.716 kb on + strand at 656.716 kb on + strand at 656.716 kb on + strand at 656.716 kb on + strand at 656.717 kb on - strand at 656.717 kb on - strand at 656.717 kb on - strand at 656.717 kb on - strand at 656.717 kb on - strand at 656.717 kb on - strand at 656.717 kb on - strand at 656.717 kb on - strand at 656.720 kb on + strand at 656.720 kb on + strand at 656.747 kb on + strand at 656.747 kb on + strand at 656.771 kb on + strand at 656.772 kb on - strand at 656.772 kb on - strand at 656.935 kb on + strand at 656.936 kb on - strand at 656.936 kb on - strand at 656.968 kb on + strand at 656.968 kb on + strand at 656.968 kb on + strand at 656.968 kb on + strand at 656.969 kb on - strand at 656.969 kb on - strand at 657.083 kb on + strand, within PFLU_RS02855 at 657.299 kb on + strand, within PFLU_RS02855 at 657.299 kb on + strand, within PFLU_RS02855 at 657.300 kb on - strand, within PFLU_RS02855 at 657.338 kb on - strand, within PFLU_RS02855 at 657.745 kb on + strand, within PFLU_RS02855 at 657.745 kb on + strand, within PFLU_RS02855 at 657.745 kb on + strand, within PFLU_RS02855 at 657.745 kb on + strand, within PFLU_RS02855 at 657.745 kb on + strand, within PFLU_RS02855 at 657.745 kb on + strand, within PFLU_RS02855 at 657.745 kb on + strand, within PFLU_RS02855 at 657.746 kb on - strand, within PFLU_RS02855 at 657.746 kb on - strand, within PFLU_RS02855 at 657.746 kb on - strand, within PFLU_RS02855 at 657.841 kb on + strand, within PFLU_RS02855 at 657.842 kb on - strand, within PFLU_RS02855 at 657.867 kb on - strand, within PFLU_RS02855 at 658.519 kb on + strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.582 kb on - strand at 658.582 kb on - strand at 658.960 kb on - strand at 659.000 kb on + strand at 659.000 kb on + strand at 659.000 kb on + strand at 659.000 kb on + strand at 659.000 kb on + strand at 659.042 kb on + strand, within PFLU_RS02865 at 659.069 kb on + strand, within PFLU_RS02865 at 659.084 kb on + strand, within PFLU_RS02865 at 659.084 kb on + strand, within PFLU_RS02865 at 659.124 kb on - strand, within PFLU_RS02865 at 659.315 kb on - strand, within PFLU_RS02865 at 659.348 kb on - strand, within PFLU_RS02865 at 659.360 kb on + strand, within PFLU_RS02865 at 659.361 kb on - strand, within PFLU_RS02865
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 655,948 + PFLU_RS02850 0.61 -0.6 655,948 + PFLU_RS02850 0.61 -0.1 655,948 + PFLU_RS02850 0.61 +1.0 656,054 + PFLU_RS02850 0.66 -0.8 656,054 + PFLU_RS02850 0.66 +0.4 656,054 + PFLU_RS02850 0.66 -0.3 656,055 - PFLU_RS02850 0.66 -1.1 656,055 - PFLU_RS02850 0.66 -0.1 656,055 - PFLU_RS02850 0.66 +0.0 656,073 + PFLU_RS02850 0.67 -0.1 656,073 + PFLU_RS02850 0.67 -0.2 656,073 + PFLU_RS02850 0.67 -1.3 656,076 + PFLU_RS02850 0.68 -0.6 656,076 + PFLU_RS02850 0.68 -0.2 656,076 + PFLU_RS02850 0.68 +0.7 656,076 + PFLU_RS02850 0.68 -0.0 656,076 + PFLU_RS02850 0.68 +0.8 656,076 + PFLU_RS02850 0.68 -0.2 656,076 + PFLU_RS02850 0.68 -0.3 656,077 - PFLU_RS02850 0.68 +0.9 656,077 - PFLU_RS02850 0.68 +0.1 656,077 - PFLU_RS02850 0.68 -0.7 656,077 - PFLU_RS02850 0.68 +0.2 656,208 + PFLU_RS02850 0.74 +0.8 656,209 - PFLU_RS02850 0.74 -0.2 656,380 + PFLU_RS02850 0.83 +1.2 656,467 - PFLU_RS02850 0.88 +0.5 656,504 + PFLU_RS02850 0.90 -0.7 656,716 + -0.5 656,716 + -0.2 656,716 + +0.1 656,716 + +0.1 656,716 + +0.5 656,716 + -0.1 656,716 + +0.5 656,716 + +0.2 656,716 + -0.3 656,716 + +0.5 656,716 + -0.1 656,717 - +0.6 656,717 - -0.5 656,717 - -0.2 656,717 - -0.0 656,717 - -0.1 656,717 - -0.4 656,717 - +0.4 656,717 - -0.5 656,720 + +0.1 656,720 + -0.1 656,747 + +1.4 656,747 + +0.7 656,771 + +0.5 656,772 - +0.2 656,772 - -0.2 656,935 + +0.2 656,936 - +0.3 656,936 - -0.4 656,968 + +0.7 656,968 + +0.3 656,968 + -0.2 656,968 + +0.4 656,969 - -0.1 656,969 - +0.5 657,083 + PFLU_RS02855 0.14 +0.8 657,299 + PFLU_RS02855 0.26 +1.2 657,299 + PFLU_RS02855 0.26 +0.4 657,300 - PFLU_RS02855 0.26 -1.1 657,338 - PFLU_RS02855 0.29 +0.5 657,745 + PFLU_RS02855 0.52 +0.2 657,745 + PFLU_RS02855 0.52 -0.5 657,745 + PFLU_RS02855 0.52 +0.1 657,745 + PFLU_RS02855 0.52 +0.7 657,745 + PFLU_RS02855 0.52 +0.3 657,745 + PFLU_RS02855 0.52 +0.1 657,745 + PFLU_RS02855 0.52 -0.9 657,746 - PFLU_RS02855 0.52 +0.1 657,746 - PFLU_RS02855 0.52 +0.7 657,746 - PFLU_RS02855 0.52 -0.2 657,841 + PFLU_RS02855 0.58 +0.1 657,842 - PFLU_RS02855 0.58 -0.1 657,867 - PFLU_RS02855 0.60 +1.1 658,519 + +1.0 658,520 - -0.7 658,520 - -0.7 658,570 + +0.3 658,570 + -0.2 658,570 + +0.1 658,570 + +0.1 658,570 + +0.5 658,570 + +0.1 658,571 - +0.7 658,571 - -0.7 658,571 - -0.1 658,571 - +0.0 658,571 - -0.5 658,571 - -0.1 658,582 - -0.2 658,582 - +0.1 658,960 - -0.4 659,000 + -0.3 659,000 + +0.2 659,000 + +1.0 659,000 + -0.1 659,000 + -0.5 659,042 + PFLU_RS02865 0.13 +0.9 659,069 + PFLU_RS02865 0.18 -1.2 659,084 + PFLU_RS02865 0.21 +0.8 659,084 + PFLU_RS02865 0.21 -0.8 659,124 - PFLU_RS02865 0.28 +0.5 659,315 - PFLU_RS02865 0.64 -0.8 659,348 - PFLU_RS02865 0.70 -0.5 659,360 + PFLU_RS02865 0.73 -0.1 659,361 - PFLU_RS02865 0.73 +0.0
Or see this region's nucleotide sequence