Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS01625

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01615 and PFLU_RS01620 are separated by 39 nucleotidesPFLU_RS01620 and PFLU_RS01625 are separated by 9 nucleotidesPFLU_RS01625 and PFLU_RS01630 are separated by 66 nucleotidesPFLU_RS01630 and PFLU_RS01635 are separated by 3 nucleotides PFLU_RS01615: PFLU_RS01615 - DUF2164 domain-containing protein, at 361,872 to 362,129 _RS01615 PFLU_RS01620: PFLU_RS01620 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 362,169 to 362,906 _RS01620 PFLU_RS01625: PFLU_RS01625 - imidazole glycerol phosphate synthase subunit HisF, at 362,916 to 363,686 _RS01625 PFLU_RS01630: PFLU_RS01630 - ABC transporter substrate-binding protein, at 363,753 to 364,508 _RS01630 PFLU_RS01635: PFLU_RS01635 - serine protease, at 364,512 to 366,077 _RS01635 Position (kb) 362 363 364Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 361.931 kb on + strand, within PFLU_RS01615at 362.037 kb on + strand, within PFLU_RS01615at 362.037 kb on + strand, within PFLU_RS01615at 362.038 kb on - strand, within PFLU_RS01615at 362.040 kb on + strand, within PFLU_RS01615at 362.040 kb on + strand, within PFLU_RS01615at 362.041 kb on - strand, within PFLU_RS01615at 362.041 kb on - strand, within PFLU_RS01615at 362.041 kb on - strand, within PFLU_RS01615at 362.156 kb on + strandat 362.177 kb on + strandat 362.178 kb on - strandat 362.178 kb on - strandat 362.212 kb on + strandat 362.212 kb on + strandat 362.212 kb on + strandat 362.213 kb on - strandat 362.213 kb on - strandat 362.213 kb on - strandat 362.213 kb on - strandat 362.213 kb on - strandat 362.213 kb on - strandat 362.213 kb on - strandat 362.445 kb on + strand, within PFLU_RS01620at 362.445 kb on + strand, within PFLU_RS01620at 362.445 kb on + strand, within PFLU_RS01620at 362.446 kb on - strand, within PFLU_RS01620at 362.446 kb on - strand, within PFLU_RS01620at 362.446 kb on - strand, within PFLU_RS01620at 362.446 kb on - strand, within PFLU_RS01620at 362.446 kb on - strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.449 kb on + strand, within PFLU_RS01620at 362.450 kb on - strand, within PFLU_RS01620at 362.450 kb on - strand, within PFLU_RS01620at 362.450 kb on - strand, within PFLU_RS01620at 362.450 kb on - strand, within PFLU_RS01620at 362.450 kb on - strand, within PFLU_RS01620at 362.466 kb on + strand, within PFLU_RS01620at 362.466 kb on + strand, within PFLU_RS01620at 362.466 kb on + strand, within PFLU_RS01620at 362.466 kb on + strand, within PFLU_RS01620at 362.467 kb on - strand, within PFLU_RS01620at 362.467 kb on - strand, within PFLU_RS01620at 362.467 kb on - strand, within PFLU_RS01620at 362.467 kb on - strand, within PFLU_RS01620at 362.470 kb on + strand, within PFLU_RS01620at 362.470 kb on + strand, within PFLU_RS01620at 362.470 kb on + strand, within PFLU_RS01620at 362.471 kb on - strand, within PFLU_RS01620at 362.471 kb on - strand, within PFLU_RS01620at 362.471 kb on - strand, within PFLU_RS01620at 362.471 kb on - strand, within PFLU_RS01620at 362.471 kb on - strand, within PFLU_RS01620at 362.665 kb on - strand, within PFLU_RS01620at 362.665 kb on - strand, within PFLU_RS01620at 362.847 kb on + strandat 362.847 kb on + strandat 362.847 kb on + strandat 362.847 kb on + strandat 362.848 kb on - strandat 362.855 kb on + strandat 362.856 kb on - strandat 362.883 kb on + strandat 362.883 kb on + strandat 362.884 kb on - strandat 362.895 kb on + strandat 362.895 kb on + strandat 363.060 kb on - strand, within PFLU_RS01625at 363.060 kb on - strand, within PFLU_RS01625at 363.110 kb on + strand, within PFLU_RS01625at 363.612 kb on - strandat 363.631 kb on - strandat 363.631 kb on - strandat 363.631 kb on - strandat 363.654 kb on + strandat 363.654 kb on + strandat 363.655 kb on - strandat 363.655 kb on - strandat 363.655 kb on - strandat 363.655 kb on - strandat 363.655 kb on - strandat 363.655 kb on - strandat 363.785 kb on + strandat 363.786 kb on - strandat 363.786 kb on - strandat 363.786 kb on - strandat 363.870 kb on + strand, within PFLU_RS01630at 363.870 kb on + strand, within PFLU_RS01630at 363.972 kb on + strand, within PFLU_RS01630at 363.972 kb on + strand, within PFLU_RS01630at 364.008 kb on + strand, within PFLU_RS01630at 364.009 kb on - strand, within PFLU_RS01630at 364.009 kb on - strand, within PFLU_RS01630at 364.036 kb on - strand, within PFLU_RS01630at 364.137 kb on - strand, within PFLU_RS01630at 364.137 kb on - strand, within PFLU_RS01630at 364.137 kb on - strand, within PFLU_RS01630at 364.137 kb on - strand, within PFLU_RS01630at 364.176 kb on + strand, within PFLU_RS01630at 364.191 kb on + strand, within PFLU_RS01630at 364.193 kb on + strand, within PFLU_RS01630at 364.194 kb on - strand, within PFLU_RS01630at 364.235 kb on + strand, within PFLU_RS01630at 364.236 kb on - strand, within PFLU_RS01630at 364.380 kb on - strand, within PFLU_RS01630at 364.380 kb on - strand, within PFLU_RS01630at 364.396 kb on - strand, within PFLU_RS01630at 364.500 kb on + strandat 364.500 kb on + strandat 364.501 kb on - strandat 364.501 kb on - strandat 364.501 kb on - strandat 364.506 kb on + strandat 364.507 kb on - strandat 364.573 kb on + strandat 364.573 kb on + strandat 364.573 kb on + strandat 364.573 kb on + strandat 364.574 kb on - strandat 364.574 kb on - strandat 364.574 kb on - strandat 364.610 kb on + strandat 364.611 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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361,931 + PFLU_RS01615 0.23 -0.3
362,037 + PFLU_RS01615 0.64 -0.3
362,037 + PFLU_RS01615 0.64 +0.3
362,038 - PFLU_RS01615 0.64 -2.7
362,040 + PFLU_RS01615 0.65 +0.7
362,040 + PFLU_RS01615 0.65 +0.2
362,041 - PFLU_RS01615 0.66 -1.5
362,041 - PFLU_RS01615 0.66 -1.0
362,041 - PFLU_RS01615 0.66 -1.3
362,156 + -2.0
362,177 + -2.0
362,178 - -1.5
362,178 - -3.2
362,212 + -1.7
362,212 + -3.6
362,212 + -3.8
362,213 - -2.2
362,213 - -3.9
362,213 - -2.5
362,213 - -3.5
362,213 - -2.6
362,213 - -3.0
362,213 - -3.5
362,445 + PFLU_RS01620 0.37 -3.2
362,445 + PFLU_RS01620 0.37 -2.6
362,445 + PFLU_RS01620 0.37 -2.4
362,446 - PFLU_RS01620 0.38 -3.8
362,446 - PFLU_RS01620 0.38 -4.0
362,446 - PFLU_RS01620 0.38 -3.2
362,446 - PFLU_RS01620 0.38 -1.6
362,446 - PFLU_RS01620 0.38 -1.6
362,449 + PFLU_RS01620 0.38 -3.5
362,449 + PFLU_RS01620 0.38 -4.1
362,449 + PFLU_RS01620 0.38 -2.7
362,449 + PFLU_RS01620 0.38 -3.4
362,449 + PFLU_RS01620 0.38 -3.8
362,449 + PFLU_RS01620 0.38 -3.4
362,449 + PFLU_RS01620 0.38 -2.0
362,449 + PFLU_RS01620 0.38 -2.9
362,449 + PFLU_RS01620 0.38 -4.1
362,449 + PFLU_RS01620 0.38 -3.4
362,449 + PFLU_RS01620 0.38 -4.2
362,449 + PFLU_RS01620 0.38 -1.0
362,449 + PFLU_RS01620 0.38 -4.4
362,449 + PFLU_RS01620 0.38 -4.0
362,450 - PFLU_RS01620 0.38 -2.6
362,450 - PFLU_RS01620 0.38 -2.2
362,450 - PFLU_RS01620 0.38 -4.3
362,450 - PFLU_RS01620 0.38 -2.2
362,450 - PFLU_RS01620 0.38 -3.1
362,466 + PFLU_RS01620 0.40 -3.5
362,466 + PFLU_RS01620 0.40 -4.2
362,466 + PFLU_RS01620 0.40 -2.8
362,466 + PFLU_RS01620 0.40 -3.0
362,467 - PFLU_RS01620 0.40 -2.0
362,467 - PFLU_RS01620 0.40 -1.1
362,467 - PFLU_RS01620 0.40 -1.8
362,467 - PFLU_RS01620 0.40 -3.7
362,470 + PFLU_RS01620 0.41 -2.6
362,470 + PFLU_RS01620 0.41 -3.0
362,470 + PFLU_RS01620 0.41 -2.7
362,471 - PFLU_RS01620 0.41 -2.2
362,471 - PFLU_RS01620 0.41 -3.9
362,471 - PFLU_RS01620 0.41 -3.2
362,471 - PFLU_RS01620 0.41 -2.4
362,471 - PFLU_RS01620 0.41 -2.0
362,665 - PFLU_RS01620 0.67 -0.8
362,665 - PFLU_RS01620 0.67 -3.7
362,847 + -3.1
362,847 + -3.3
362,847 + -4.1
362,847 + -1.5
362,848 - -3.7
362,855 + -3.0
362,856 - -3.6
362,883 + -0.2
362,883 + -3.7
362,884 - -1.7
362,895 + -0.3
362,895 + -0.6
363,060 - PFLU_RS01625 0.19 -3.4
363,060 - PFLU_RS01625 0.19 -2.9
363,110 + PFLU_RS01625 0.25 -2.8
363,612 - -2.6
363,631 - -2.5
363,631 - -1.7
363,631 - -3.2
363,654 + -3.5
363,654 + -2.3
363,655 - -3.3
363,655 - -2.2
363,655 - -3.9
363,655 - -1.5
363,655 - -1.3
363,655 - -0.7
363,785 + +0.5
363,786 - -1.7
363,786 - -0.2
363,786 - +1.2
363,870 + PFLU_RS01630 0.15 -1.0
363,870 + PFLU_RS01630 0.15 -0.3
363,972 + PFLU_RS01630 0.29 +0.1
363,972 + PFLU_RS01630 0.29 -0.3
364,008 + PFLU_RS01630 0.34 +1.5
364,009 - PFLU_RS01630 0.34 -1.8
364,009 - PFLU_RS01630 0.34 +0.9
364,036 - PFLU_RS01630 0.37 +0.1
364,137 - PFLU_RS01630 0.51 +0.5
364,137 - PFLU_RS01630 0.51 -0.2
364,137 - PFLU_RS01630 0.51 +0.9
364,137 - PFLU_RS01630 0.51 +0.5
364,176 + PFLU_RS01630 0.56 +0.6
364,191 + PFLU_RS01630 0.58 +0.5
364,193 + PFLU_RS01630 0.58 +0.4
364,194 - PFLU_RS01630 0.58 -0.4
364,235 + PFLU_RS01630 0.64 +1.6
364,236 - PFLU_RS01630 0.64 +0.5
364,380 - PFLU_RS01630 0.83 +0.2
364,380 - PFLU_RS01630 0.83 +0.6
364,396 - PFLU_RS01630 0.85 +0.1
364,500 + +0.4
364,500 + +0.3
364,501 - +0.3
364,501 - -1.5
364,501 - -0.5
364,506 + +0.7
364,507 - -0.2
364,573 + -1.6
364,573 + -1.3
364,573 + +0.1
364,573 + -0.9
364,574 - -1.0
364,574 - +1.1
364,574 - -1.2
364,610 + +0.1
364,611 - +0.3

Or see this region's nucleotide sequence