Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00405 and PFLU_RS00410 are separated by 34 nucleotides PFLU_RS00410 and PFLU_RS00415 are separated by 168 nucleotides PFLU_RS00415 and PFLU_RS00420 are separated by 10 nucleotides PFLU_RS00420 and PFLU_RS00425 overlap by 4 nucleotides
PFLU_RS00405: PFLU_RS00405 - cytochrome c5 family protein, at 82,046 to 82,348
_RS00405
PFLU_RS00410: PFLU_RS00410 - cytochrome c4, at 82,383 to 83,009
_RS00410
PFLU_RS00415: PFLU_RS00415 - thiol:disulfide interchange protein DsbA/DsbL, at 83,178 to 83,813
_RS00415
PFLU_RS00420: PFLU_RS00420 - endonuclease, at 83,824 to 84,702
_RS00420
PFLU_RS00425: PFLU_RS00425 - diguanylate cyclase, at 84,699 to 86,753
_RS00425
Position (kb) 83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 82.294 kb on + strand, within PFLU_RS00405 at 82.294 kb on + strand, within PFLU_RS00405 at 82.304 kb on + strand, within PFLU_RS00405 at 82.305 kb on - strand, within PFLU_RS00405 at 82.305 kb on - strand, within PFLU_RS00405 at 82.333 kb on + strand at 82.334 kb on - strand at 82.334 kb on - strand at 82.334 kb on - strand at 82.334 kb on - strand at 82.334 kb on - strand at 82.342 kb on + strand at 82.343 kb on - strand at 82.346 kb on + strand at 82.346 kb on + strand at 82.346 kb on + strand at 82.346 kb on + strand at 82.346 kb on + strand at 82.346 kb on + strand at 82.346 kb on + strand at 82.347 kb on - strand at 82.347 kb on - strand at 82.347 kb on - strand at 82.347 kb on - strand at 82.347 kb on - strand at 82.347 kb on - strand at 82.347 kb on - strand at 82.353 kb on + strand at 82.354 kb on - strand at 82.368 kb on + strand at 82.368 kb on + strand at 82.368 kb on + strand at 82.368 kb on + strand at 82.368 kb on + strand at 82.369 kb on - strand at 82.369 kb on - strand at 82.369 kb on - strand at 82.377 kb on + strand at 82.377 kb on + strand at 82.377 kb on + strand at 82.378 kb on - strand at 82.378 kb on - strand at 82.378 kb on - strand at 82.378 kb on - strand at 82.378 kb on - strand at 82.458 kb on - strand, within PFLU_RS00410 at 82.458 kb on - strand, within PFLU_RS00410 at 82.458 kb on - strand, within PFLU_RS00410 at 82.495 kb on + strand, within PFLU_RS00410 at 82.495 kb on + strand, within PFLU_RS00410 at 82.495 kb on + strand, within PFLU_RS00410 at 82.495 kb on + strand, within PFLU_RS00410 at 82.495 kb on + strand, within PFLU_RS00410 at 82.495 kb on + strand, within PFLU_RS00410 at 82.495 kb on + strand, within PFLU_RS00410 at 82.495 kb on + strand, within PFLU_RS00410 at 82.495 kb on + strand, within PFLU_RS00410 at 82.495 kb on + strand, within PFLU_RS00410 at 82.495 kb on + strand, within PFLU_RS00410 at 82.496 kb on - strand, within PFLU_RS00410 at 82.496 kb on - strand, within PFLU_RS00410 at 82.496 kb on - strand, within PFLU_RS00410 at 82.496 kb on - strand, within PFLU_RS00410 at 82.496 kb on - strand, within PFLU_RS00410 at 82.496 kb on - strand, within PFLU_RS00410 at 82.496 kb on - strand, within PFLU_RS00410 at 82.496 kb on - strand, within PFLU_RS00410 at 82.496 kb on - strand, within PFLU_RS00410 at 82.523 kb on + strand, within PFLU_RS00410 at 82.524 kb on - strand, within PFLU_RS00410 at 82.572 kb on + strand, within PFLU_RS00410 at 82.572 kb on + strand, within PFLU_RS00410 at 82.573 kb on - strand, within PFLU_RS00410 at 82.681 kb on - strand, within PFLU_RS00410 at 82.681 kb on - strand, within PFLU_RS00410 at 82.863 kb on + strand, within PFLU_RS00410 at 82.863 kb on + strand, within PFLU_RS00410 at 82.863 kb on + strand, within PFLU_RS00410 at 82.863 kb on + strand, within PFLU_RS00410 at 82.863 kb on + strand, within PFLU_RS00410 at 82.863 kb on + strand, within PFLU_RS00410 at 82.863 kb on + strand, within PFLU_RS00410 at 82.864 kb on - strand, within PFLU_RS00410 at 82.864 kb on - strand, within PFLU_RS00410 at 82.864 kb on - strand, within PFLU_RS00410 at 82.864 kb on - strand, within PFLU_RS00410 at 82.864 kb on - strand, within PFLU_RS00410 at 82.864 kb on - strand, within PFLU_RS00410 at 82.864 kb on - strand, within PFLU_RS00410 at 82.864 kb on - strand, within PFLU_RS00410 at 82.864 kb on - strand, within PFLU_RS00410 at 82.864 kb on - strand, within PFLU_RS00410 at 82.913 kb on + strand, within PFLU_RS00410 at 82.940 kb on + strand, within PFLU_RS00410 at 82.941 kb on - strand, within PFLU_RS00410 at 82.941 kb on - strand, within PFLU_RS00410 at 82.941 kb on - strand, within PFLU_RS00410 at 82.941 kb on - strand, within PFLU_RS00410 at 82.989 kb on + strand at 82.989 kb on + strand at 82.989 kb on + strand at 82.989 kb on + strand at 82.989 kb on + strand at 82.989 kb on + strand at 82.989 kb on + strand at 82.989 kb on + strand at 82.989 kb on + strand at 82.989 kb on + strand at 82.989 kb on + strand at 82.989 kb on + strand at 82.989 kb on + strand at 82.989 kb on + strand at 82.990 kb on - strand at 82.990 kb on - strand at 82.990 kb on - strand at 82.990 kb on - strand at 82.990 kb on - strand at 82.990 kb on - strand at 82.990 kb on - strand at 82.990 kb on - strand at 82.990 kb on - strand at 82.990 kb on - strand at 82.990 kb on - strand at 82.990 kb on - strand at 82.990 kb on - strand at 83.007 kb on + strand at 83.007 kb on + strand at 83.007 kb on + strand at 83.008 kb on - strand at 83.008 kb on - strand at 83.008 kb on - strand at 83.008 kb on - strand at 83.008 kb on - strand at 83.008 kb on - strand at 83.035 kb on + strand at 83.054 kb on + strand at 83.054 kb on + strand at 83.055 kb on - strand at 83.055 kb on - strand at 83.055 kb on - strand at 83.055 kb on - strand at 83.055 kb on - strand at 83.068 kb on + strand at 83.068 kb on + strand at 83.068 kb on + strand at 83.158 kb on + strand at 83.158 kb on + strand at 83.158 kb on + strand at 83.158 kb on + strand at 83.159 kb on - strand at 83.159 kb on - strand at 83.159 kb on - strand at 83.159 kb on - strand at 83.159 kb on - strand at 83.159 kb on - strand at 83.172 kb on + strand at 83.172 kb on + strand at 83.173 kb on - strand at 83.183 kb on + strand at 83.184 kb on - strand at 83.274 kb on + strand, within PFLU_RS00415 at 83.275 kb on - strand, within PFLU_RS00415 at 83.362 kb on - strand, within PFLU_RS00415 at 83.362 kb on - strand, within PFLU_RS00415 at 83.406 kb on - strand, within PFLU_RS00415 at 83.426 kb on + strand, within PFLU_RS00415 at 83.426 kb on + strand, within PFLU_RS00415 at 83.427 kb on - strand, within PFLU_RS00415 at 83.427 kb on - strand, within PFLU_RS00415 at 83.427 kb on - strand, within PFLU_RS00415 at 83.504 kb on + strand, within PFLU_RS00415 at 83.504 kb on + strand, within PFLU_RS00415 at 83.504 kb on + strand, within PFLU_RS00415 at 83.505 kb on - strand, within PFLU_RS00415 at 83.682 kb on + strand, within PFLU_RS00415 at 83.690 kb on - strand, within PFLU_RS00415 at 83.724 kb on + strand, within PFLU_RS00415 at 83.724 kb on + strand, within PFLU_RS00415 at 83.724 kb on + strand, within PFLU_RS00415 at 83.725 kb on - strand, within PFLU_RS00415 at 83.811 kb on + strand at 83.811 kb on + strand at 83.812 kb on - strand at 83.812 kb on - strand at 83.812 kb on - strand at 83.958 kb on + strand, within PFLU_RS00420 at 83.968 kb on + strand, within PFLU_RS00420 at 83.968 kb on + strand, within PFLU_RS00420 at 83.968 kb on + strand, within PFLU_RS00420 at 83.968 kb on + strand, within PFLU_RS00420 at 83.977 kb on + strand, within PFLU_RS00420 at 83.977 kb on + strand, within PFLU_RS00420 at 83.977 kb on + strand, within PFLU_RS00420 at 83.977 kb on + strand, within PFLU_RS00420 at 83.977 kb on + strand, within PFLU_RS00420 at 83.978 kb on - strand, within PFLU_RS00420 at 83.978 kb on - strand, within PFLU_RS00420 at 83.978 kb on - strand, within PFLU_RS00420 at 84.050 kb on + strand, within PFLU_RS00420 at 84.050 kb on + strand, within PFLU_RS00420 at 84.050 kb on + strand, within PFLU_RS00420 at 84.050 kb on + strand, within PFLU_RS00420 at 84.050 kb on + strand, within PFLU_RS00420 at 84.050 kb on + strand, within PFLU_RS00420 at 84.051 kb on - strand, within PFLU_RS00420 at 84.051 kb on - strand, within PFLU_RS00420 at 84.051 kb on - strand, within PFLU_RS00420 at 84.051 kb on - strand, within PFLU_RS00420 at 84.051 kb on - strand, within PFLU_RS00420 at 84.051 kb on - strand, within PFLU_RS00420 at 84.112 kb on + strand, within PFLU_RS00420 at 84.112 kb on + strand, within PFLU_RS00420 at 84.112 kb on + strand, within PFLU_RS00420 at 84.112 kb on + strand, within PFLU_RS00420 at 84.113 kb on - strand, within PFLU_RS00420 at 84.164 kb on - strand, within PFLU_RS00420 at 84.164 kb on - strand, within PFLU_RS00420 at 84.376 kb on + strand, within PFLU_RS00420 at 84.376 kb on + strand, within PFLU_RS00420 at 84.377 kb on - strand, within PFLU_RS00420 at 84.413 kb on + strand, within PFLU_RS00420 at 84.413 kb on + strand, within PFLU_RS00420 at 84.413 kb on + strand, within PFLU_RS00420 at 84.413 kb on + strand, within PFLU_RS00420 at 84.414 kb on - strand, within PFLU_RS00420 at 84.414 kb on - strand, within PFLU_RS00420 at 84.414 kb on - strand, within PFLU_RS00420 at 84.482 kb on + strand, within PFLU_RS00420 at 84.558 kb on + strand, within PFLU_RS00420 at 84.558 kb on + strand, within PFLU_RS00420 at 84.662 kb on + strand at 84.732 kb on + strand at 84.732 kb on + strand at 84.732 kb on + strand at 84.733 kb on - strand at 84.733 kb on - strand at 84.745 kb on + strand at 84.746 kb on - strand at 84.746 kb on - strand at 84.746 kb on - strand at 84.746 kb on - strand at 84.796 kb on + strand at 84.796 kb on + strand at 84.796 kb on + strand at 84.797 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 82,294 + PFLU_RS00405 0.82 +0.9 82,294 + PFLU_RS00405 0.82 +0.2 82,304 + PFLU_RS00405 0.85 -0.8 82,305 - PFLU_RS00405 0.85 +0.3 82,305 - PFLU_RS00405 0.85 -0.9 82,333 + +0.1 82,334 - +0.3 82,334 - -0.4 82,334 - -1.3 82,334 - +0.2 82,334 - +0.1 82,342 + +0.6 82,343 - -0.0 82,346 + +0.4 82,346 + +0.3 82,346 + +0.1 82,346 + +0.2 82,346 + +0.6 82,346 + +0.7 82,346 + +0.7 82,347 - -0.9 82,347 - -0.3 82,347 - -0.6 82,347 - -1.6 82,347 - -0.3 82,347 - -0.3 82,347 - -0.3 82,353 + +0.7 82,354 - +0.6 82,368 + -1.4 82,368 + -0.0 82,368 + -0.5 82,368 + -0.2 82,368 + -0.5 82,369 - +0.4 82,369 - -0.1 82,369 - +0.1 82,377 + -0.2 82,377 + -1.3 82,377 + -0.4 82,378 - -0.6 82,378 - -0.3 82,378 - -0.7 82,378 - +0.5 82,378 - -0.1 82,458 - PFLU_RS00410 0.12 +0.8 82,458 - PFLU_RS00410 0.12 -0.7 82,458 - PFLU_RS00410 0.12 -0.1 82,495 + PFLU_RS00410 0.18 +0.0 82,495 + PFLU_RS00410 0.18 +0.3 82,495 + PFLU_RS00410 0.18 -0.1 82,495 + PFLU_RS00410 0.18 -0.8 82,495 + PFLU_RS00410 0.18 -1.8 82,495 + PFLU_RS00410 0.18 +0.6 82,495 + PFLU_RS00410 0.18 -0.7 82,495 + PFLU_RS00410 0.18 +0.2 82,495 + PFLU_RS00410 0.18 -0.6 82,495 + PFLU_RS00410 0.18 -0.3 82,495 + PFLU_RS00410 0.18 +0.0 82,496 - PFLU_RS00410 0.18 -1.6 82,496 - PFLU_RS00410 0.18 -0.2 82,496 - PFLU_RS00410 0.18 -0.3 82,496 - PFLU_RS00410 0.18 +0.8 82,496 - PFLU_RS00410 0.18 -0.0 82,496 - PFLU_RS00410 0.18 -0.4 82,496 - PFLU_RS00410 0.18 -2.8 82,496 - PFLU_RS00410 0.18 -0.2 82,496 - PFLU_RS00410 0.18 -2.2 82,523 + PFLU_RS00410 0.22 +0.0 82,524 - PFLU_RS00410 0.22 -2.0 82,572 + PFLU_RS00410 0.30 +0.3 82,572 + PFLU_RS00410 0.30 -0.6 82,573 - PFLU_RS00410 0.30 -0.3 82,681 - PFLU_RS00410 0.48 +0.2 82,681 - PFLU_RS00410 0.48 -0.5 82,863 + PFLU_RS00410 0.77 -0.8 82,863 + PFLU_RS00410 0.77 +0.7 82,863 + PFLU_RS00410 0.77 -1.2 82,863 + PFLU_RS00410 0.77 +0.0 82,863 + PFLU_RS00410 0.77 +0.1 82,863 + PFLU_RS00410 0.77 -0.9 82,863 + PFLU_RS00410 0.77 -2.2 82,864 - PFLU_RS00410 0.77 +0.5 82,864 - PFLU_RS00410 0.77 -1.0 82,864 - PFLU_RS00410 0.77 -0.7 82,864 - PFLU_RS00410 0.77 -0.7 82,864 - PFLU_RS00410 0.77 -0.2 82,864 - PFLU_RS00410 0.77 -0.4 82,864 - PFLU_RS00410 0.77 -0.3 82,864 - PFLU_RS00410 0.77 -0.9 82,864 - PFLU_RS00410 0.77 +0.3 82,864 - PFLU_RS00410 0.77 -0.4 82,913 + PFLU_RS00410 0.85 +0.4 82,940 + PFLU_RS00410 0.89 -0.3 82,941 - PFLU_RS00410 0.89 -0.0 82,941 - PFLU_RS00410 0.89 -0.7 82,941 - PFLU_RS00410 0.89 +0.1 82,941 - PFLU_RS00410 0.89 -1.8 82,989 + +0.3 82,989 + -0.1 82,989 + -0.6 82,989 + +0.0 82,989 + +0.0 82,989 + -1.5 82,989 + -1.3 82,989 + -0.3 82,989 + -0.5 82,989 + +0.6 82,989 + +0.4 82,989 + +0.1 82,989 + -0.2 82,989 + -1.0 82,990 - -1.7 82,990 - -0.7 82,990 - -0.2 82,990 - -0.9 82,990 - +0.4 82,990 - -0.3 82,990 - -3.4 82,990 - -0.3 82,990 - -1.4 82,990 - +0.7 82,990 - -1.2 82,990 - +0.0 82,990 - +0.2 83,007 + +0.0 83,007 + +0.2 83,007 + +0.4 83,008 - -1.4 83,008 - -0.3 83,008 - +0.1 83,008 - +0.1 83,008 - +0.6 83,008 - +1.1 83,035 + +0.1 83,054 + -0.5 83,054 + +0.4 83,055 - +0.6 83,055 - +1.1 83,055 - -0.9 83,055 - -0.5 83,055 - +0.1 83,068 + -0.0 83,068 + -0.9 83,068 + +0.1 83,158 + +0.9 83,158 + -0.4 83,158 + +1.1 83,158 + -0.4 83,159 - -0.5 83,159 - -1.2 83,159 - +1.1 83,159 - +0.4 83,159 - +0.1 83,159 - +0.7 83,172 + +0.1 83,172 + +0.4 83,173 - -0.8 83,183 + -1.5 83,184 - -0.2 83,274 + PFLU_RS00415 0.15 -1.7 83,275 - PFLU_RS00415 0.15 -0.7 83,362 - PFLU_RS00415 0.29 -2.8 83,362 - PFLU_RS00415 0.29 -0.8 83,406 - PFLU_RS00415 0.36 -1.7 83,426 + PFLU_RS00415 0.39 -1.7 83,426 + PFLU_RS00415 0.39 +0.6 83,427 - PFLU_RS00415 0.39 -2.4 83,427 - PFLU_RS00415 0.39 -0.7 83,427 - PFLU_RS00415 0.39 +0.7 83,504 + PFLU_RS00415 0.51 -3.3 83,504 + PFLU_RS00415 0.51 -2.0 83,504 + PFLU_RS00415 0.51 -1.1 83,505 - PFLU_RS00415 0.51 -0.5 83,682 + PFLU_RS00415 0.79 -1.8 83,690 - PFLU_RS00415 0.81 -1.0 83,724 + PFLU_RS00415 0.86 -1.5 83,724 + PFLU_RS00415 0.86 -1.5 83,724 + PFLU_RS00415 0.86 -0.5 83,725 - PFLU_RS00415 0.86 -1.2 83,811 + +0.8 83,811 + +0.3 83,812 - +0.1 83,812 - +0.4 83,812 - +0.1 83,958 + PFLU_RS00420 0.15 +0.3 83,968 + PFLU_RS00420 0.16 +0.8 83,968 + PFLU_RS00420 0.16 +0.1 83,968 + PFLU_RS00420 0.16 +0.2 83,968 + PFLU_RS00420 0.16 -0.9 83,977 + PFLU_RS00420 0.17 +0.0 83,977 + PFLU_RS00420 0.17 +0.4 83,977 + PFLU_RS00420 0.17 +0.2 83,977 + PFLU_RS00420 0.17 +1.4 83,977 + PFLU_RS00420 0.17 -0.5 83,978 - PFLU_RS00420 0.18 -0.7 83,978 - PFLU_RS00420 0.18 -0.0 83,978 - PFLU_RS00420 0.18 -0.3 84,050 + PFLU_RS00420 0.26 +0.8 84,050 + PFLU_RS00420 0.26 +0.6 84,050 + PFLU_RS00420 0.26 -1.4 84,050 + PFLU_RS00420 0.26 +0.9 84,050 + PFLU_RS00420 0.26 +0.4 84,050 + PFLU_RS00420 0.26 +0.1 84,051 - PFLU_RS00420 0.26 -0.1 84,051 - PFLU_RS00420 0.26 -0.0 84,051 - PFLU_RS00420 0.26 +0.1 84,051 - PFLU_RS00420 0.26 -0.1 84,051 - PFLU_RS00420 0.26 +0.4 84,051 - PFLU_RS00420 0.26 +0.9 84,112 + PFLU_RS00420 0.33 -0.3 84,112 + PFLU_RS00420 0.33 -1.0 84,112 + PFLU_RS00420 0.33 -0.1 84,112 + PFLU_RS00420 0.33 +0.5 84,113 - PFLU_RS00420 0.33 +0.7 84,164 - PFLU_RS00420 0.39 -0.5 84,164 - PFLU_RS00420 0.39 +0.2 84,376 + PFLU_RS00420 0.63 +0.0 84,376 + PFLU_RS00420 0.63 -0.2 84,377 - PFLU_RS00420 0.63 +0.1 84,413 + PFLU_RS00420 0.67 +0.4 84,413 + PFLU_RS00420 0.67 -0.5 84,413 + PFLU_RS00420 0.67 +0.1 84,413 + PFLU_RS00420 0.67 +0.0 84,414 - PFLU_RS00420 0.67 +0.1 84,414 - PFLU_RS00420 0.67 +0.4 84,414 - PFLU_RS00420 0.67 -0.2 84,482 + PFLU_RS00420 0.75 +0.5 84,558 + PFLU_RS00420 0.84 +1.6 84,558 + PFLU_RS00420 0.84 +0.1 84,662 + -0.1 84,732 + -1.5 84,732 + +0.4 84,732 + +0.5 84,733 - -0.8 84,733 - +0.4 84,745 + +0.2 84,746 - -0.9 84,746 - +0.2 84,746 - -0.3 84,746 - -0.0 84,796 + -0.0 84,796 + -0.2 84,796 + +1.3 84,797 - +0.6
Or see this region's nucleotide sequence