Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00300 and PFLU_RS00305 are separated by 35 nucleotides PFLU_RS00305 and PFLU_RS00310 are separated by 6 nucleotides PFLU_RS00310 and PFLU_RS00315 are separated by 28 nucleotides PFLU_RS00315 and PFLU_RS00320 overlap by 35 nucleotides
PFLU_RS00300: PFLU_RS00300 - cytochrome c oxidase assembly protein, at 62,116 to 62,667
_RS00300
PFLU_RS00305: PFLU_RS00305 - cytochrome c oxidase subunit 3, at 62,703 to 63,590
_RS00305
PFLU_RS00310: PFLU_RS00310 - twin transmembrane helix small protein, at 63,597 to 63,800
_RS00310
PFLU_RS00315: PFLU_RS00315 - SURF1 family protein, at 63,829 to 64,593
_RS00315
PFLU_RS00320: PFLU_RS00320 - hypothetical protein, at 64,559 to 65,143
_RS00320
Position (kb) 63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.608 kb on + strand, within PFLU_RS00300 at 62.608 kb on + strand, within PFLU_RS00300 at 62.608 kb on + strand, within PFLU_RS00300 at 62.609 kb on - strand, within PFLU_RS00300 at 62.623 kb on - strand at 62.665 kb on + strand at 62.665 kb on + strand at 62.665 kb on + strand at 62.665 kb on + strand at 62.665 kb on + strand at 62.666 kb on - strand at 62.666 kb on - strand at 62.666 kb on - strand at 62.669 kb on + strand at 62.669 kb on + strand at 62.669 kb on + strand at 62.670 kb on - strand at 62.670 kb on - strand at 62.670 kb on - strand at 62.700 kb on + strand at 62.701 kb on - strand at 62.701 kb on - strand at 62.717 kb on + strand at 62.718 kb on - strand at 62.718 kb on - strand at 62.721 kb on + strand at 62.721 kb on + strand at 62.721 kb on + strand at 62.721 kb on + strand at 62.721 kb on + strand at 62.721 kb on + strand at 62.722 kb on - strand at 62.724 kb on + strand at 62.724 kb on + strand at 62.724 kb on + strand at 62.724 kb on + strand at 62.725 kb on - strand at 62.725 kb on - strand at 62.729 kb on - strand at 62.753 kb on - strand at 62.753 kb on - strand at 62.877 kb on + strand, within PFLU_RS00305 at 62.877 kb on + strand, within PFLU_RS00305 at 62.877 kb on + strand, within PFLU_RS00305 at 62.877 kb on + strand, within PFLU_RS00305 at 62.877 kb on + strand, within PFLU_RS00305 at 62.877 kb on + strand, within PFLU_RS00305 at 62.878 kb on - strand, within PFLU_RS00305 at 62.878 kb on - strand, within PFLU_RS00305 at 62.878 kb on - strand, within PFLU_RS00305 at 62.932 kb on - strand, within PFLU_RS00305 at 62.932 kb on - strand, within PFLU_RS00305 at 62.932 kb on - strand, within PFLU_RS00305 at 63.027 kb on + strand, within PFLU_RS00305 at 63.027 kb on + strand, within PFLU_RS00305 at 63.027 kb on + strand, within PFLU_RS00305 at 63.027 kb on + strand, within PFLU_RS00305 at 63.027 kb on + strand, within PFLU_RS00305 at 63.028 kb on - strand, within PFLU_RS00305 at 63.028 kb on - strand, within PFLU_RS00305 at 63.031 kb on + strand, within PFLU_RS00305 at 63.031 kb on + strand, within PFLU_RS00305 at 63.031 kb on + strand, within PFLU_RS00305 at 63.032 kb on - strand, within PFLU_RS00305 at 63.032 kb on - strand, within PFLU_RS00305 at 63.032 kb on - strand, within PFLU_RS00305 at 63.071 kb on + strand, within PFLU_RS00305 at 63.197 kb on + strand, within PFLU_RS00305 at 63.197 kb on + strand, within PFLU_RS00305 at 63.197 kb on + strand, within PFLU_RS00305 at 63.197 kb on + strand, within PFLU_RS00305 at 63.197 kb on + strand, within PFLU_RS00305 at 63.197 kb on + strand, within PFLU_RS00305 at 63.339 kb on + strand, within PFLU_RS00305 at 63.339 kb on + strand, within PFLU_RS00305 at 63.339 kb on + strand, within PFLU_RS00305 at 63.339 kb on + strand, within PFLU_RS00305 at 63.339 kb on + strand, within PFLU_RS00305 at 63.339 kb on + strand, within PFLU_RS00305 at 63.339 kb on + strand, within PFLU_RS00305 at 63.340 kb on - strand, within PFLU_RS00305 at 63.340 kb on - strand, within PFLU_RS00305 at 63.340 kb on - strand, within PFLU_RS00305 at 63.340 kb on - strand, within PFLU_RS00305 at 63.340 kb on - strand, within PFLU_RS00305 at 63.340 kb on - strand, within PFLU_RS00305 at 63.340 kb on - strand, within PFLU_RS00305 at 63.340 kb on - strand, within PFLU_RS00305 at 63.340 kb on - strand, within PFLU_RS00305 at 63.351 kb on + strand, within PFLU_RS00305 at 63.351 kb on + strand, within PFLU_RS00305 at 63.351 kb on + strand, within PFLU_RS00305 at 63.351 kb on + strand, within PFLU_RS00305 at 63.352 kb on - strand, within PFLU_RS00305 at 63.352 kb on - strand, within PFLU_RS00305 at 63.352 kb on - strand, within PFLU_RS00305 at 63.352 kb on - strand, within PFLU_RS00305 at 63.352 kb on - strand, within PFLU_RS00305 at 63.352 kb on - strand, within PFLU_RS00305 at 63.353 kb on + strand, within PFLU_RS00305 at 63.353 kb on + strand, within PFLU_RS00305 at 63.353 kb on + strand, within PFLU_RS00305 at 63.353 kb on + strand, within PFLU_RS00305 at 63.353 kb on + strand, within PFLU_RS00305 at 63.354 kb on - strand, within PFLU_RS00305 at 63.354 kb on - strand, within PFLU_RS00305 at 63.354 kb on - strand, within PFLU_RS00305 at 63.354 kb on - strand, within PFLU_RS00305 at 63.354 kb on - strand, within PFLU_RS00305 at 63.354 kb on - strand, within PFLU_RS00305 at 63.385 kb on + strand, within PFLU_RS00305 at 63.385 kb on + strand, within PFLU_RS00305 at 63.386 kb on - strand, within PFLU_RS00305 at 63.386 kb on - strand, within PFLU_RS00305 at 63.386 kb on - strand, within PFLU_RS00305 at 63.388 kb on - strand, within PFLU_RS00305 at 63.531 kb on + strand at 63.531 kb on + strand at 63.579 kb on + strand at 63.579 kb on + strand at 63.579 kb on + strand at 63.579 kb on + strand at 63.579 kb on + strand at 63.579 kb on + strand at 63.579 kb on + strand at 63.579 kb on + strand at 63.579 kb on + strand at 63.580 kb on - strand at 63.580 kb on - strand at 63.580 kb on - strand at 63.580 kb on - strand at 63.672 kb on + strand, within PFLU_RS00310 at 63.673 kb on - strand, within PFLU_RS00310 at 63.840 kb on + strand at 63.840 kb on + strand at 63.840 kb on + strand at 63.840 kb on + strand at 63.840 kb on + strand at 63.840 kb on + strand at 63.840 kb on + strand at 63.840 kb on + strand at 63.840 kb on + strand at 63.841 kb on - strand at 63.841 kb on - strand at 63.841 kb on - strand at 63.841 kb on - strand at 63.841 kb on - strand at 63.841 kb on - strand at 63.841 kb on - strand at 63.841 kb on - strand at 63.841 kb on - strand at 63.841 kb on - strand at 63.841 kb on - strand at 63.842 kb on + strand at 63.842 kb on + strand at 63.842 kb on + strand at 63.842 kb on + strand at 63.843 kb on - strand at 63.843 kb on - strand at 63.843 kb on - strand at 63.843 kb on - strand at 63.887 kb on + strand at 63.887 kb on + strand at 63.887 kb on + strand at 63.887 kb on + strand at 63.887 kb on + strand at 63.976 kb on + strand, within PFLU_RS00315 at 63.976 kb on + strand, within PFLU_RS00315 at 63.976 kb on + strand, within PFLU_RS00315 at 63.976 kb on + strand, within PFLU_RS00315 at 63.977 kb on - strand, within PFLU_RS00315 at 63.977 kb on - strand, within PFLU_RS00315 at 63.977 kb on - strand, within PFLU_RS00315 at 63.977 kb on - strand, within PFLU_RS00315 at 64.026 kb on + strand, within PFLU_RS00315 at 64.026 kb on + strand, within PFLU_RS00315 at 64.267 kb on + strand, within PFLU_RS00315 at 64.267 kb on + strand, within PFLU_RS00315 at 64.267 kb on + strand, within PFLU_RS00315 at 64.267 kb on + strand, within PFLU_RS00315 at 64.267 kb on + strand, within PFLU_RS00315 at 64.268 kb on - strand, within PFLU_RS00315 at 64.268 kb on - strand, within PFLU_RS00315 at 64.268 kb on - strand, within PFLU_RS00315 at 64.391 kb on - strand, within PFLU_RS00315 at 64.423 kb on + strand, within PFLU_RS00315 at 64.423 kb on + strand, within PFLU_RS00315 at 64.519 kb on + strand at 64.519 kb on + strand at 64.519 kb on + strand at 64.519 kb on + strand at 64.519 kb on + strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.526 kb on - strand at 64.679 kb on + strand, within PFLU_RS00320 at 64.679 kb on + strand, within PFLU_RS00320 at 64.679 kb on + strand, within PFLU_RS00320 at 64.679 kb on + strand, within PFLU_RS00320 at 64.679 kb on + strand, within PFLU_RS00320 at 64.679 kb on + strand, within PFLU_RS00320 at 64.679 kb on + strand, within PFLU_RS00320 at 64.679 kb on + strand, within PFLU_RS00320 at 64.679 kb on + strand, within PFLU_RS00320 at 64.679 kb on + strand, within PFLU_RS00320 at 64.680 kb on - strand, within PFLU_RS00320 at 64.680 kb on - strand, within PFLU_RS00320 at 64.680 kb on - strand, within PFLU_RS00320 at 64.680 kb on - strand, within PFLU_RS00320 at 64.680 kb on - strand, within PFLU_RS00320 at 64.680 kb on - strand, within PFLU_RS00320 at 64.680 kb on - strand, within PFLU_RS00320 at 64.680 kb on - strand, within PFLU_RS00320 at 64.680 kb on - strand, within PFLU_RS00320 at 64.680 kb on - strand, within PFLU_RS00320 at 64.715 kb on + strand, within PFLU_RS00320 at 64.715 kb on + strand, within PFLU_RS00320 at 64.715 kb on + strand, within PFLU_RS00320 at 64.716 kb on - strand, within PFLU_RS00320 at 64.716 kb on - strand, within PFLU_RS00320 at 64.716 kb on - strand, within PFLU_RS00320 at 64.716 kb on - strand, within PFLU_RS00320 at 64.716 kb on - strand, within PFLU_RS00320 at 64.716 kb on - strand, within PFLU_RS00320 at 64.716 kb on - strand, within PFLU_RS00320
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 62,608 + PFLU_RS00300 0.89 +0.1 62,608 + PFLU_RS00300 0.89 -0.1 62,608 + PFLU_RS00300 0.89 -2.0 62,609 - PFLU_RS00300 0.89 -0.0 62,623 - +0.9 62,665 + +0.0 62,665 + +0.5 62,665 + +0.9 62,665 + -0.5 62,665 + -0.5 62,666 - -1.2 62,666 - -0.2 62,666 - +0.9 62,669 + +0.4 62,669 + +0.4 62,669 + -0.1 62,670 - -0.9 62,670 - +0.2 62,670 - +0.3 62,700 + -0.7 62,701 - +0.5 62,701 - -0.8 62,717 + -0.3 62,718 - +0.1 62,718 - +0.8 62,721 + -2.4 62,721 + -0.0 62,721 + -0.8 62,721 + -0.5 62,721 + -0.2 62,721 + +1.3 62,722 - -1.1 62,724 + +0.0 62,724 + -0.2 62,724 + -0.3 62,724 + +1.5 62,725 - +0.1 62,725 - -1.1 62,729 - +0.4 62,753 - -0.1 62,753 - +0.6 62,877 + PFLU_RS00305 0.20 +0.1 62,877 + PFLU_RS00305 0.20 +0.0 62,877 + PFLU_RS00305 0.20 +0.2 62,877 + PFLU_RS00305 0.20 +0.4 62,877 + PFLU_RS00305 0.20 +0.3 62,877 + PFLU_RS00305 0.20 +1.0 62,878 - PFLU_RS00305 0.20 -0.3 62,878 - PFLU_RS00305 0.20 +0.4 62,878 - PFLU_RS00305 0.20 +0.1 62,932 - PFLU_RS00305 0.26 +0.4 62,932 - PFLU_RS00305 0.26 -0.4 62,932 - PFLU_RS00305 0.26 -1.4 63,027 + PFLU_RS00305 0.36 -0.1 63,027 + PFLU_RS00305 0.36 -0.3 63,027 + PFLU_RS00305 0.36 +0.3 63,027 + PFLU_RS00305 0.36 +0.5 63,027 + PFLU_RS00305 0.36 +1.1 63,028 - PFLU_RS00305 0.37 -0.4 63,028 - PFLU_RS00305 0.37 -0.1 63,031 + PFLU_RS00305 0.37 -0.1 63,031 + PFLU_RS00305 0.37 -1.2 63,031 + PFLU_RS00305 0.37 +1.0 63,032 - PFLU_RS00305 0.37 -0.4 63,032 - PFLU_RS00305 0.37 +0.3 63,032 - PFLU_RS00305 0.37 +0.4 63,071 + PFLU_RS00305 0.41 -0.6 63,197 + PFLU_RS00305 0.56 -0.9 63,197 + PFLU_RS00305 0.56 -0.5 63,197 + PFLU_RS00305 0.56 +0.3 63,197 + PFLU_RS00305 0.56 -0.7 63,197 + PFLU_RS00305 0.56 +0.5 63,197 + PFLU_RS00305 0.56 +0.8 63,339 + PFLU_RS00305 0.72 -0.7 63,339 + PFLU_RS00305 0.72 +0.2 63,339 + PFLU_RS00305 0.72 +0.1 63,339 + PFLU_RS00305 0.72 -0.3 63,339 + PFLU_RS00305 0.72 -0.1 63,339 + PFLU_RS00305 0.72 +0.1 63,339 + PFLU_RS00305 0.72 -0.3 63,340 - PFLU_RS00305 0.72 -0.6 63,340 - PFLU_RS00305 0.72 +0.1 63,340 - PFLU_RS00305 0.72 +0.1 63,340 - PFLU_RS00305 0.72 -2.5 63,340 - PFLU_RS00305 0.72 -0.0 63,340 - PFLU_RS00305 0.72 +0.7 63,340 - PFLU_RS00305 0.72 -0.5 63,340 - PFLU_RS00305 0.72 +0.5 63,340 - PFLU_RS00305 0.72 -0.1 63,351 + PFLU_RS00305 0.73 -0.1 63,351 + PFLU_RS00305 0.73 +0.9 63,351 + PFLU_RS00305 0.73 +0.7 63,351 + PFLU_RS00305 0.73 +0.8 63,352 - PFLU_RS00305 0.73 -0.3 63,352 - PFLU_RS00305 0.73 +1.9 63,352 - PFLU_RS00305 0.73 +0.6 63,352 - PFLU_RS00305 0.73 +0.0 63,352 - PFLU_RS00305 0.73 -0.4 63,352 - PFLU_RS00305 0.73 +0.9 63,353 + PFLU_RS00305 0.73 -0.1 63,353 + PFLU_RS00305 0.73 +0.3 63,353 + PFLU_RS00305 0.73 +0.1 63,353 + PFLU_RS00305 0.73 -0.0 63,353 + PFLU_RS00305 0.73 +0.6 63,354 - PFLU_RS00305 0.73 +0.0 63,354 - PFLU_RS00305 0.73 +0.8 63,354 - PFLU_RS00305 0.73 +0.1 63,354 - PFLU_RS00305 0.73 -0.0 63,354 - PFLU_RS00305 0.73 -0.7 63,354 - PFLU_RS00305 0.73 -1.2 63,385 + PFLU_RS00305 0.77 -0.0 63,385 + PFLU_RS00305 0.77 -0.7 63,386 - PFLU_RS00305 0.77 +1.1 63,386 - PFLU_RS00305 0.77 -0.4 63,386 - PFLU_RS00305 0.77 +0.1 63,388 - PFLU_RS00305 0.77 -1.2 63,531 + -0.4 63,531 + +1.1 63,579 + -0.4 63,579 + -0.4 63,579 + +0.3 63,579 + -2.0 63,579 + +0.2 63,579 + +0.8 63,579 + -0.1 63,579 + +1.2 63,579 + -0.2 63,580 - -0.8 63,580 - +0.5 63,580 - +0.5 63,580 - -0.2 63,672 + PFLU_RS00310 0.37 -0.6 63,673 - PFLU_RS00310 0.37 -0.7 63,840 + -0.4 63,840 + +0.7 63,840 + +0.9 63,840 + -0.4 63,840 + -0.2 63,840 + -0.4 63,840 + -1.7 63,840 + -0.4 63,840 + +0.5 63,841 - -0.1 63,841 - -0.0 63,841 - -2.5 63,841 - -0.1 63,841 - -0.5 63,841 - -0.4 63,841 - +0.6 63,841 - -0.3 63,841 - +0.1 63,841 - -1.5 63,841 - +0.6 63,842 + +0.8 63,842 + -0.2 63,842 + -0.2 63,842 + -0.2 63,843 - -0.1 63,843 - -0.7 63,843 - +0.1 63,843 - +0.2 63,887 + -0.5 63,887 + -0.5 63,887 + +0.9 63,887 + +0.8 63,887 + +0.7 63,976 + PFLU_RS00315 0.19 -0.1 63,976 + PFLU_RS00315 0.19 +0.2 63,976 + PFLU_RS00315 0.19 -0.3 63,976 + PFLU_RS00315 0.19 -0.8 63,977 - PFLU_RS00315 0.19 +0.9 63,977 - PFLU_RS00315 0.19 -0.6 63,977 - PFLU_RS00315 0.19 +0.3 63,977 - PFLU_RS00315 0.19 -0.0 64,026 + PFLU_RS00315 0.26 +0.5 64,026 + PFLU_RS00315 0.26 +0.1 64,267 + PFLU_RS00315 0.57 -1.1 64,267 + PFLU_RS00315 0.57 -0.9 64,267 + PFLU_RS00315 0.57 +0.1 64,267 + PFLU_RS00315 0.57 +0.2 64,267 + PFLU_RS00315 0.57 -0.6 64,268 - PFLU_RS00315 0.57 -1.2 64,268 - PFLU_RS00315 0.57 +0.9 64,268 - PFLU_RS00315 0.57 +0.6 64,391 - PFLU_RS00315 0.73 -0.2 64,423 + PFLU_RS00315 0.78 -0.2 64,423 + PFLU_RS00315 0.78 -0.5 64,519 + +0.6 64,519 + +0.2 64,519 + -0.1 64,519 + +0.1 64,519 + -0.4 64,520 - +0.1 64,520 - +0.0 64,526 - -1.0 64,679 + PFLU_RS00320 0.21 -0.5 64,679 + PFLU_RS00320 0.21 +0.4 64,679 + PFLU_RS00320 0.21 -0.1 64,679 + PFLU_RS00320 0.21 +0.6 64,679 + PFLU_RS00320 0.21 +0.7 64,679 + PFLU_RS00320 0.21 -0.2 64,679 + PFLU_RS00320 0.21 -0.3 64,679 + PFLU_RS00320 0.21 +0.2 64,679 + PFLU_RS00320 0.21 -0.4 64,679 + PFLU_RS00320 0.21 +0.9 64,680 - PFLU_RS00320 0.21 -0.1 64,680 - PFLU_RS00320 0.21 +0.3 64,680 - PFLU_RS00320 0.21 +0.3 64,680 - PFLU_RS00320 0.21 +0.3 64,680 - PFLU_RS00320 0.21 -0.3 64,680 - PFLU_RS00320 0.21 +0.7 64,680 - PFLU_RS00320 0.21 -0.3 64,680 - PFLU_RS00320 0.21 -0.3 64,680 - PFLU_RS00320 0.21 -0.1 64,680 - PFLU_RS00320 0.21 +0.3 64,715 + PFLU_RS00320 0.27 +0.9 64,715 + PFLU_RS00320 0.27 +0.2 64,715 + PFLU_RS00320 0.27 +0.8 64,716 - PFLU_RS00320 0.27 -0.3 64,716 - PFLU_RS00320 0.27 -0.5 64,716 - PFLU_RS00320 0.27 +0.2 64,716 - PFLU_RS00320 0.27 +0.1 64,716 - PFLU_RS00320 0.27 +0.7 64,716 - PFLU_RS00320 0.27 -0.3 64,716 - PFLU_RS00320 0.27 -0.3
Or see this region's nucleotide sequence