Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27630 and PS417_27635 are separated by 94 nucleotides PS417_27635 and PS417_27640 overlap by 4 nucleotides PS417_27640 and PS417_27645 are separated by 111 nucleotides
PS417_27630: PS417_27630 - MFS transporter, at 5,957,101 to 5,958,372
_27630
PS417_27635: PS417_27635 - magnesium chelatase, at 5,958,467 to 5,959,963
_27635
PS417_27640: PS417_27640 - TetR family transcriptional regulator, at 5,959,960 to 5,960,544
_27640
PS417_27645: PS417_27645 - membrane protein, at 5,960,656 to 5,961,570
_27645
Position (kb) 5958
5959
5960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5957.743 kb on + strand, within PS417_27630 at 5957.744 kb on - strand, within PS417_27630 at 5957.744 kb on - strand, within PS417_27630 at 5957.764 kb on + strand, within PS417_27630 at 5957.764 kb on + strand, within PS417_27630 at 5957.833 kb on + strand, within PS417_27630 at 5957.833 kb on + strand, within PS417_27630 at 5957.848 kb on - strand, within PS417_27630 at 5957.866 kb on + strand, within PS417_27630 at 5957.866 kb on + strand, within PS417_27630 at 5957.867 kb on - strand, within PS417_27630 at 5957.997 kb on + strand, within PS417_27630 at 5957.997 kb on + strand, within PS417_27630 at 5957.997 kb on + strand, within PS417_27630 at 5957.997 kb on + strand, within PS417_27630 at 5957.998 kb on - strand, within PS417_27630 at 5957.998 kb on - strand, within PS417_27630 at 5957.998 kb on - strand, within PS417_27630 at 5957.998 kb on - strand, within PS417_27630 at 5958.338 kb on - strand at 5958.349 kb on + strand at 5958.349 kb on + strand at 5958.349 kb on + strand at 5958.373 kb on + strand at 5958.373 kb on + strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.382 kb on + strand at 5958.419 kb on - strand at 5958.419 kb on - strand at 5959.013 kb on + strand, within PS417_27635 at 5959.014 kb on - strand, within PS417_27635 at 5959.048 kb on - strand, within PS417_27635 at 5959.395 kb on + strand, within PS417_27635 at 5959.396 kb on - strand, within PS417_27635 at 5960.418 kb on - strand, within PS417_27640 at 5960.570 kb on + strand at 5960.635 kb on + strand at 5960.635 kb on + strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.749 kb on + strand, within PS417_27645 at 5960.879 kb on - strand, within PS417_27645 at 5960.879 kb on - strand, within PS417_27645 at 5960.957 kb on - strand, within PS417_27645
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 5,957,743 + PS417_27630 0.50 +0.7 5,957,744 - PS417_27630 0.51 -0.6 5,957,744 - PS417_27630 0.51 -0.1 5,957,764 + PS417_27630 0.52 +0.3 5,957,764 + PS417_27630 0.52 +0.4 5,957,833 + PS417_27630 0.58 -0.4 5,957,833 + PS417_27630 0.58 -0.0 5,957,848 - PS417_27630 0.59 +0.1 5,957,866 + PS417_27630 0.60 -0.7 5,957,866 + PS417_27630 0.60 +0.0 5,957,867 - PS417_27630 0.60 -0.8 5,957,997 + PS417_27630 0.70 +1.2 5,957,997 + PS417_27630 0.70 -2.4 5,957,997 + PS417_27630 0.70 -1.2 5,957,997 + PS417_27630 0.70 -1.2 5,957,998 - PS417_27630 0.71 -0.1 5,957,998 - PS417_27630 0.71 -0.6 5,957,998 - PS417_27630 0.71 -2.0 5,957,998 - PS417_27630 0.71 +0.1 5,958,338 - +0.6 5,958,349 + -0.0 5,958,349 + -0.8 5,958,349 + +1.3 5,958,373 + -0.1 5,958,373 + -0.4 5,958,374 - -0.8 5,958,374 - +0.4 5,958,374 - +1.8 5,958,374 - -0.8 5,958,374 - -0.1 5,958,374 - +1.0 5,958,374 - +0.6 5,958,382 + -0.6 5,958,419 - -2.1 5,958,419 - +0.3 5,959,013 + PS417_27635 0.36 -3.0 5,959,014 - PS417_27635 0.37 -1.5 5,959,048 - PS417_27635 0.39 -1.3 5,959,395 + PS417_27635 0.62 -0.2 5,959,396 - PS417_27635 0.62 -0.3 5,960,418 - PS417_27640 0.78 -0.3 5,960,570 + +0.2 5,960,635 + +1.7 5,960,635 + +0.0 5,960,636 - +1.2 5,960,636 - +0.3 5,960,636 - -1.1 5,960,636 - -0.2 5,960,749 + PS417_27645 0.10 +1.2 5,960,879 - PS417_27645 0.24 +0.9 5,960,879 - PS417_27645 0.24 +0.3 5,960,957 - PS417_27645 0.33 +1.0
Or see this region's nucleotide sequence