Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26820 and PS417_26825 overlap by 1 nucleotides PS417_26825 and PS417_26830 are separated by 71 nucleotides
PS417_26820: PS417_26820 - peptidase M16, at 5,791,437 to 5,792,927
_26820
PS417_26825: PS417_26825 - 16S rRNA methyltransferase, at 5,792,927 to 5,793,535
_26825
PS417_26830: PS417_26830 - alpha/beta hydrolase, at 5,793,607 to 5,794,602
_26830
Position (kb) 5792
5793
5794 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5791.929 kb on - strand, within PS417_26820 at 5792.167 kb on - strand, within PS417_26820 at 5792.258 kb on + strand, within PS417_26820 at 5792.388 kb on + strand, within PS417_26820 at 5792.389 kb on - strand, within PS417_26820 at 5792.389 kb on - strand, within PS417_26820 at 5792.481 kb on + strand, within PS417_26820 at 5792.482 kb on - strand, within PS417_26820 at 5792.490 kb on + strand, within PS417_26820 at 5792.601 kb on + strand at 5792.724 kb on + strand, within PS417_26820 at 5792.724 kb on + strand, within PS417_26820 at 5792.724 kb on + strand, within PS417_26820 at 5792.782 kb on + strand at 5792.926 kb on - strand at 5793.419 kb on + strand, within PS417_26825 at 5793.503 kb on + strand at 5793.507 kb on - strand at 5793.595 kb on - strand at 5793.622 kb on - strand at 5793.696 kb on + strand at 5793.696 kb on + strand at 5793.835 kb on + strand, within PS417_26830 at 5793.937 kb on + strand, within PS417_26830 at 5793.938 kb on - strand, within PS417_26830 at 5793.938 kb on - strand, within PS417_26830 at 5794.012 kb on + strand, within PS417_26830 at 5794.012 kb on + strand, within PS417_26830 at 5794.012 kb on + strand, within PS417_26830 at 5794.013 kb on - strand, within PS417_26830 at 5794.013 kb on - strand, within PS417_26830 at 5794.165 kb on + strand, within PS417_26830 at 5794.198 kb on + strand, within PS417_26830 at 5794.199 kb on - strand, within PS417_26830 at 5794.354 kb on + strand, within PS417_26830 at 5794.357 kb on + strand, within PS417_26830 at 5794.381 kb on + strand, within PS417_26830 at 5794.455 kb on - strand, within PS417_26830
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 5,791,929 - PS417_26820 0.33 -1.8 5,792,167 - PS417_26820 0.49 -1.9 5,792,258 + PS417_26820 0.55 +0.2 5,792,388 + PS417_26820 0.64 -0.8 5,792,389 - PS417_26820 0.64 -0.4 5,792,389 - PS417_26820 0.64 -0.4 5,792,481 + PS417_26820 0.70 +0.6 5,792,482 - PS417_26820 0.70 -1.0 5,792,490 + PS417_26820 0.71 -0.2 5,792,601 + -0.7 5,792,724 + PS417_26820 0.86 -1.0 5,792,724 + PS417_26820 0.86 +0.0 5,792,724 + PS417_26820 0.86 -2.0 5,792,782 + -0.1 5,792,926 - +1.1 5,793,419 + PS417_26825 0.81 +0.2 5,793,503 + -0.7 5,793,507 - -0.3 5,793,595 - -0.4 5,793,622 - +0.4 5,793,696 + -0.4 5,793,696 + +0.7 5,793,835 + PS417_26830 0.23 +0.1 5,793,937 + PS417_26830 0.33 +1.2 5,793,938 - PS417_26830 0.33 -0.8 5,793,938 - PS417_26830 0.33 +0.6 5,794,012 + PS417_26830 0.41 +3.0 5,794,012 + PS417_26830 0.41 +0.9 5,794,012 + PS417_26830 0.41 -1.5 5,794,013 - PS417_26830 0.41 +0.2 5,794,013 - PS417_26830 0.41 -0.1 5,794,165 + PS417_26830 0.56 -0.5 5,794,198 + PS417_26830 0.59 +0.5 5,794,199 - PS417_26830 0.59 -0.8 5,794,354 + PS417_26830 0.75 +1.1 5,794,357 + PS417_26830 0.75 -1.4 5,794,381 + PS417_26830 0.78 -0.5 5,794,455 - PS417_26830 0.85 +0.4
Or see this region's nucleotide sequence