Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28665 and ABID97_RS28670 are separated by 149 nucleotides ABID97_RS28670 and ABID97_RS28675 are separated by 531 nucleotides ABID97_RS28675 and ABID97_RS28680 are separated by 33 nucleotides
ABID97_RS28665: ABID97_RS28665 - response regulator, at 652,099 to 652,470
_RS28665
ABID97_RS28670: ABID97_RS28670 - hypothetical protein, at 652,620 to 652,898
_RS28670
ABID97_RS28675: ABID97_RS28675 - hypothetical protein, at 653,430 to 654,017
_RS28675
ABID97_RS28680: ABID97_RS28680 - LysR family transcriptional regulator, at 654,051 to 654,965
_RS28680
Position (kb) 653
654
655 Strain fitness (log2 ratio) -2
-1
0
1
2 at 652.540 kb on - strand at 652.540 kb on - strand at 652.540 kb on - strand at 652.540 kb on - strand at 652.558 kb on - strand at 652.824 kb on + strand, within ABID97_RS28670 at 652.825 kb on - strand, within ABID97_RS28670 at 652.990 kb on + strand at 653.023 kb on + strand at 653.324 kb on - strand at 653.562 kb on + strand, within ABID97_RS28675 at 653.563 kb on - strand, within ABID97_RS28675 at 654.015 kb on + strand at 654.226 kb on + strand, within ABID97_RS28680 at 654.227 kb on - strand, within ABID97_RS28680 at 654.227 kb on - strand, within ABID97_RS28680 at 654.770 kb on - strand, within ABID97_RS28680 at 654.772 kb on + strand, within ABID97_RS28680 at 654.772 kb on + strand, within ABID97_RS28680 at 655.012 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 652,540 - +0.4 652,540 - +0.6 652,540 - +1.0 652,540 - -0.1 652,558 - +1.1 652,824 + ABID97_RS28670 0.73 -0.5 652,825 - ABID97_RS28670 0.73 +0.6 652,990 + -2.3 653,023 + +1.1 653,324 - +0.2 653,562 + ABID97_RS28675 0.22 -1.2 653,563 - ABID97_RS28675 0.23 -0.8 654,015 + +0.1 654,226 + ABID97_RS28680 0.19 -2.2 654,227 - ABID97_RS28680 0.19 +0.3 654,227 - ABID97_RS28680 0.19 -1.4 654,770 - ABID97_RS28680 0.79 +2.0 654,772 + ABID97_RS28680 0.79 +0.7 654,772 + ABID97_RS28680 0.79 -0.1 655,012 + +0.1
Or see this region's nucleotide sequence