Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28265

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28255 and ABID97_RS28260 overlap by 4 nucleotidesABID97_RS28260 and ABID97_RS28265 overlap by 4 nucleotidesABID97_RS28265 and ABID97_RS28270 overlap by 4 nucleotides ABID97_RS28255: ABID97_RS28255 - long-chain-fatty-acid--CoA ligase, at 570,956 to 572,650 _RS28255 ABID97_RS28260: ABID97_RS28260 - enoyl-CoA hydratase/isomerase family protein, at 572,647 to 573,453 _RS28260 ABID97_RS28265: ABID97_RS28265 - OB-fold domain-containing protein, at 573,450 to 573,839 _RS28265 ABID97_RS28270: ABID97_RS28270 - thiolase, at 573,836 to 575,014 _RS28270 Position (kb) 573 574Strain fitness (log2 ratio) -1 0 1at 572.534 kb on + strandat 573.549 kb on + strand, within ABID97_RS28265at 574.315 kb on - strand, within ABID97_RS28270

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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572,534 + -1.1
573,549 + ABID97_RS28265 0.25 -1.0
574,315 - ABID97_RS28270 0.41 -0.2

Or see this region's nucleotide sequence