Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28060 and ABID97_RS28065 overlap by 4 nucleotides ABID97_RS28065 and ABID97_RS28070 are separated by 212 nucleotides ABID97_RS28070 and ABID97_RS28075 are separated by 96 nucleotides
ABID97_RS28060: ABID97_RS28060 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 528,835 to 530,691
_RS28060
ABID97_RS28065: ABID97_RS28065 - FAD-dependent oxidoreductase, at 530,688 to 532,490
_RS28065
ABID97_RS28070: ABID97_RS28070 - SRPBCC family protein, at 532,703 to 532,972
_RS28070
ABID97_RS28075: ABID97_RS28075 - tyrosine-type recombinase/integrase, at 533,069 to 534,082
_RS28075
Position (kb) 530
531
532
533 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 529.764 kb on - strand, within ABID97_RS28060 at 529.943 kb on + strand, within ABID97_RS28060 at 529.944 kb on - strand, within ABID97_RS28060 at 530.015 kb on + strand, within ABID97_RS28060 at 530.186 kb on + strand, within ABID97_RS28060 at 530.187 kb on - strand, within ABID97_RS28060 at 530.514 kb on - strand at 530.845 kb on + strand at 530.846 kb on - strand at 530.846 kb on - strand at 530.846 kb on - strand at 531.115 kb on + strand, within ABID97_RS28065 at 531.116 kb on - strand, within ABID97_RS28065 at 531.209 kb on - strand, within ABID97_RS28065 at 531.976 kb on + strand, within ABID97_RS28065 at 531.976 kb on + strand, within ABID97_RS28065 at 532.361 kb on - strand at 532.361 kb on - strand at 532.361 kb on - strand at 532.433 kb on - strand at 532.459 kb on + strand at 532.652 kb on + strand at 532.778 kb on + strand, within ABID97_RS28070 at 532.812 kb on - strand, within ABID97_RS28070 at 532.833 kb on - strand, within ABID97_RS28070 at 532.970 kb on + strand at 532.970 kb on + strand at 533.336 kb on + strand, within ABID97_RS28075 at 533.453 kb on + strand, within ABID97_RS28075 at 533.454 kb on - strand, within ABID97_RS28075
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 529,764 - ABID97_RS28060 0.50 -0.9 529,943 + ABID97_RS28060 0.60 -1.7 529,944 - ABID97_RS28060 0.60 +0.5 530,015 + ABID97_RS28060 0.64 +0.2 530,186 + ABID97_RS28060 0.73 +1.1 530,187 - ABID97_RS28060 0.73 -1.6 530,514 - -1.6 530,845 + +0.2 530,846 - -0.0 530,846 - -1.9 530,846 - +0.4 531,115 + ABID97_RS28065 0.24 -4.0 531,116 - ABID97_RS28065 0.24 +0.1 531,209 - ABID97_RS28065 0.29 -0.3 531,976 + ABID97_RS28065 0.71 -1.2 531,976 + ABID97_RS28065 0.71 -0.1 532,361 - -0.1 532,361 - -0.8 532,361 - +1.9 532,433 - -0.6 532,459 + +1.5 532,652 + +1.8 532,778 + ABID97_RS28070 0.28 +1.9 532,812 - ABID97_RS28070 0.40 +0.6 532,833 - ABID97_RS28070 0.48 +0.6 532,970 + -2.3 532,970 + -0.8 533,336 + ABID97_RS28075 0.26 +0.6 533,453 + ABID97_RS28075 0.38 -0.6 533,454 - ABID97_RS28075 0.38 -1.8
Or see this region's nucleotide sequence