Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27780 and ABID97_RS27785 are separated by 85 nucleotides ABID97_RS27785 and ABID97_RS27790 are separated by 108 nucleotides ABID97_RS27790 and ABID97_RS27795 are separated by 18 nucleotides ABID97_RS27795 and ABID97_RS27800 are separated by 203 nucleotides
ABID97_RS27780: ABID97_RS27780 - efflux RND transporter periplasmic adaptor subunit, at 476,636 to 477,751
_RS27780
ABID97_RS27785: ABID97_RS27785 - TetR/AcrR family transcriptional regulator, at 477,837 to 478,454
_RS27785
ABID97_RS27790: ABID97_RS27790 - TolC family protein, at 478,563 to 480,038
_RS27790
ABID97_RS27795: ABID97_RS27795 - TetR/AcrR family transcriptional regulator, at 480,057 to 480,647
_RS27795
ABID97_RS27800: ABID97_RS27800 - branched-chain amino acid ABC transporter permease, at 480,851 to 481,723
_RS27800
Position (kb) 478
479
480
481 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 477.932 kb on - strand, within ABID97_RS27785 at 477.949 kb on + strand, within ABID97_RS27785 at 477.949 kb on + strand, within ABID97_RS27785 at 477.950 kb on - strand, within ABID97_RS27785 at 477.950 kb on - strand, within ABID97_RS27785 at 478.105 kb on + strand, within ABID97_RS27785 at 478.106 kb on - strand, within ABID97_RS27785 at 478.288 kb on + strand, within ABID97_RS27785 at 478.288 kb on + strand, within ABID97_RS27785 at 478.289 kb on - strand, within ABID97_RS27785 at 478.289 kb on - strand, within ABID97_RS27785 at 478.645 kb on - strand at 478.911 kb on + strand, within ABID97_RS27790 at 479.130 kb on + strand, within ABID97_RS27790 at 479.131 kb on - strand, within ABID97_RS27790 at 479.131 kb on - strand, within ABID97_RS27790 at 479.131 kb on - strand, within ABID97_RS27790 at 479.131 kb on - strand, within ABID97_RS27790 at 479.131 kb on - strand, within ABID97_RS27790 at 479.131 kb on - strand, within ABID97_RS27790 at 479.131 kb on - strand, within ABID97_RS27790 at 479.529 kb on + strand, within ABID97_RS27790 at 479.533 kb on - strand, within ABID97_RS27790 at 480.377 kb on - strand, within ABID97_RS27795
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 477,932 - ABID97_RS27785 0.15 -4.0 477,949 + ABID97_RS27785 0.18 -5.1 477,949 + ABID97_RS27785 0.18 -2.5 477,950 - ABID97_RS27785 0.18 -1.9 477,950 - ABID97_RS27785 0.18 -4.2 478,105 + ABID97_RS27785 0.43 -2.9 478,106 - ABID97_RS27785 0.44 -1.3 478,288 + ABID97_RS27785 0.73 -4.1 478,288 + ABID97_RS27785 0.73 -2.0 478,289 - ABID97_RS27785 0.73 -3.0 478,289 - ABID97_RS27785 0.73 -4.4 478,645 - -3.4 478,911 + ABID97_RS27790 0.24 -0.1 479,130 + ABID97_RS27790 0.38 +0.7 479,131 - ABID97_RS27790 0.38 -2.2 479,131 - ABID97_RS27790 0.38 +0.7 479,131 - ABID97_RS27790 0.38 +0.4 479,131 - ABID97_RS27790 0.38 -0.7 479,131 - ABID97_RS27790 0.38 -0.4 479,131 - ABID97_RS27790 0.38 -0.6 479,131 - ABID97_RS27790 0.38 +0.6 479,529 + ABID97_RS27790 0.65 +1.5 479,533 - ABID97_RS27790 0.66 -0.8 480,377 - ABID97_RS27795 0.54 -0.5
Or see this region's nucleotide sequence