Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27285

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27275 and ABID97_RS27280 are separated by 50 nucleotidesABID97_RS27280 and ABID97_RS27285 are separated by 21 nucleotidesABID97_RS27285 and ABID97_RS27290 are separated by 102 nucleotides ABID97_RS27275: ABID97_RS27275 - amidohydrolase family protein, at 368,848 to 370,188 _RS27275 ABID97_RS27280: ABID97_RS27280 - nuclear transport factor 2 family protein, at 370,239 to 370,604 _RS27280 ABID97_RS27285: ABID97_RS27285 - LysR family transcriptional regulator, at 370,626 to 371,519 _RS27285 ABID97_RS27290: ABID97_RS27290 - methyltransferase domain-containing protein, at 371,622 to 372,533 _RS27290 ABID97_RS27295: ABID97_RS27295 - SDR family oxidoreductase, at 372,517 to 373,308 _RS27295 Position (kb) 370 371 372Strain fitness (log2 ratio) -2 -1 0 1at 369.736 kb on + strand, within ABID97_RS27275at 369.877 kb on + strand, within ABID97_RS27275at 369.878 kb on - strand, within ABID97_RS27275at 371.125 kb on + strand, within ABID97_RS27285at 371.125 kb on + strand, within ABID97_RS27285at 371.126 kb on - strand, within ABID97_RS27285at 371.527 kb on + strandat 371.528 kb on - strandat 371.534 kb on + strandat 372.187 kb on - strand, within ABID97_RS27290at 372.315 kb on + strand, within ABID97_RS27290

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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369,736 + ABID97_RS27275 0.66 +0.2
369,877 + ABID97_RS27275 0.77 +0.2
369,878 - ABID97_RS27275 0.77 -0.0
371,125 + ABID97_RS27285 0.56 +0.0
371,125 + ABID97_RS27285 0.56 +0.4
371,126 - ABID97_RS27285 0.56 +0.2
371,527 + -0.4
371,528 - +1.6
371,534 + +0.3
372,187 - ABID97_RS27290 0.62 -2.0
372,315 + ABID97_RS27290 0.76 -2.3

Or see this region's nucleotide sequence