Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27095 and ABID97_RS27100 are separated by 137 nucleotides ABID97_RS27100 and ABID97_RS27105 are separated by 68 nucleotides ABID97_RS27105 and ABID97_RS27110 are separated by 411 nucleotides
ABID97_RS27095: ABID97_RS27095 - nitric oxide reductase transcriptional regulator NorR, at 336,587 to 338,173
_RS27095
ABID97_RS27100: ABID97_RS27100 - NO-inducible flavohemoprotein, at 338,311 to 339,501
_RS27100
ABID97_RS27105: ABID97_RS27105 - DUF1330 domain-containing protein, at 339,570 to 339,857
_RS27105
ABID97_RS27110: ABID97_RS27110 - hypothetical protein, at 340,269 to 340,532
_RS27110
Position (kb) 338
339
340 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 338.507 kb on - strand, within ABID97_RS27100 at 338.728 kb on + strand, within ABID97_RS27100 at 338.728 kb on + strand, within ABID97_RS27100 at 338.957 kb on - strand, within ABID97_RS27100 at 339.464 kb on - strand at 339.580 kb on - strand at 339.619 kb on - strand, within ABID97_RS27105 at 339.990 kb on - strand at 340.000 kb on - strand at 340.039 kb on - strand at 340.141 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 338,507 - ABID97_RS27100 0.16 +0.8 338,728 + ABID97_RS27100 0.35 +0.2 338,728 + ABID97_RS27100 0.35 +0.8 338,957 - ABID97_RS27100 0.54 +0.9 339,464 - -0.6 339,580 - -4.3 339,619 - ABID97_RS27105 0.17 +0.5 339,990 - +0.4 340,000 - -0.4 340,039 - +0.2 340,141 - -1.8
Or see this region's nucleotide sequence