Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26645 and ABID97_RS26650 are separated by 7 nucleotides ABID97_RS26650 and ABID97_RS26655 are separated by 105 nucleotides ABID97_RS26655 and ABID97_RS26660 are separated by 24 nucleotides ABID97_RS26660 and ABID97_RS26665 are separated by 162 nucleotides ABID97_RS26665 and ABID97_RS26670 are separated by 24 nucleotides
ABID97_RS26645: ABID97_RS26645 - hypothetical protein, at 253,725 to 254,081
_RS26645
ABID97_RS26650: ABID97_RS26650 - zeta toxin family protein, at 254,089 to 254,682
_RS26650
ABID97_RS26655: ABID97_RS26655 - hypothetical protein, at 254,788 to 255,072
_RS26655
ABID97_RS26660: ABID97_RS26660 - hypothetical protein, at 255,097 to 255,471
_RS26660
ABID97_RS26665: ABID97_RS26665 - DUF1801 domain-containing protein, at 255,634 to 256,011
_RS26665
ABID97_RS26670: ABID97_RS26670 - DUF1801 domain-containing protein, at 256,036 to 256,461
_RS26670
Position (kb) 254
255
256 Strain fitness (log2 ratio) -1
0
1
2
3 at 253.826 kb on - strand, within ABID97_RS26645 at 254.162 kb on + strand, within ABID97_RS26650 at 254.162 kb on + strand, within ABID97_RS26650 at 254.163 kb on - strand, within ABID97_RS26650 at 254.163 kb on - strand, within ABID97_RS26650 at 254.389 kb on + strand, within ABID97_RS26650 at 254.656 kb on + strand at 255.026 kb on + strand, within ABID97_RS26655 at 255.027 kb on - strand, within ABID97_RS26655 at 255.027 kb on - strand, within ABID97_RS26655 at 255.027 kb on - strand, within ABID97_RS26655 at 255.125 kb on + strand at 255.126 kb on - strand at 255.206 kb on + strand at 255.207 kb on - strand, within ABID97_RS26660 at 255.207 kb on - strand, within ABID97_RS26660 at 255.230 kb on + strand, within ABID97_RS26660 at 255.249 kb on - strand, within ABID97_RS26660 at 255.272 kb on + strand, within ABID97_RS26660 at 255.272 kb on + strand, within ABID97_RS26660 at 255.272 kb on + strand, within ABID97_RS26660 at 255.276 kb on - strand, within ABID97_RS26660 at 255.315 kb on - strand, within ABID97_RS26660 at 255.315 kb on - strand, within ABID97_RS26660 at 255.315 kb on - strand, within ABID97_RS26660 at 255.318 kb on - strand, within ABID97_RS26660 at 255.507 kb on + strand at 255.507 kb on + strand at 255.670 kb on + strand at 255.670 kb on + strand at 255.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 253,826 - ABID97_RS26645 0.28 -0.1 254,162 + ABID97_RS26650 0.12 -0.8 254,162 + ABID97_RS26650 0.12 -0.3 254,163 - ABID97_RS26650 0.12 +0.7 254,163 - ABID97_RS26650 0.12 -0.0 254,389 + ABID97_RS26650 0.51 +0.6 254,656 + -0.5 255,026 + ABID97_RS26655 0.84 -0.3 255,027 - ABID97_RS26655 0.84 -0.8 255,027 - ABID97_RS26655 0.84 +3.7 255,027 - ABID97_RS26655 0.84 +0.7 255,125 + -0.1 255,126 - -0.3 255,206 + +0.1 255,207 - ABID97_RS26660 0.29 +0.6 255,207 - ABID97_RS26660 0.29 -0.3 255,230 + ABID97_RS26660 0.35 -0.2 255,249 - ABID97_RS26660 0.41 -0.7 255,272 + ABID97_RS26660 0.47 +0.3 255,272 + ABID97_RS26660 0.47 +0.3 255,272 + ABID97_RS26660 0.47 +0.0 255,276 - ABID97_RS26660 0.48 +0.4 255,315 - ABID97_RS26660 0.58 -0.8 255,315 - ABID97_RS26660 0.58 +0.6 255,315 - ABID97_RS26660 0.58 +1.2 255,318 - ABID97_RS26660 0.59 +1.5 255,507 + +0.1 255,507 + +1.1 255,670 + +1.1 255,670 + -1.2 255,671 - +2.0
Or see this region's nucleotide sequence