Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26375 and ABID97_RS26380 are separated by 186 nucleotides ABID97_RS26380 and ABID97_RS26385 are separated by 192 nucleotides ABID97_RS26385 and ABID97_RS26390 are separated by 2 nucleotides ABID97_RS26390 and ABID97_RS26395 are separated by 179 nucleotides
ABID97_RS26375: ABID97_RS26375 - LysR substrate-binding domain-containing protein, at 196,574 to 196,999
_RS26375
ABID97_RS26380: ABID97_RS26380 - helix-turn-helix transcriptional regulator, at 197,186 to 197,623
_RS26380
ABID97_RS26385: ABID97_RS26385 - cupin domain-containing protein, at 197,816 to 198,172
_RS26385
ABID97_RS26390: ABID97_RS26390 - HAD-IA family hydrolase, at 198,175 to 198,873
_RS26390
ABID97_RS26395: ABID97_RS26395 - DUF2231 domain-containing protein, at 199,053 to 199,547
_RS26395
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.942 kb on + strand, within ABID97_RS26375 at 197.050 kb on + strand at 197.050 kb on + strand at 197.051 kb on - strand at 197.051 kb on - strand at 197.066 kb on - strand at 197.245 kb on + strand, within ABID97_RS26380 at 197.246 kb on - strand, within ABID97_RS26380 at 197.288 kb on - strand, within ABID97_RS26380 at 197.288 kb on - strand, within ABID97_RS26380 at 197.419 kb on - strand, within ABID97_RS26380 at 197.582 kb on + strand at 197.583 kb on - strand at 197.616 kb on - strand at 197.659 kb on - strand at 197.817 kb on + strand at 197.899 kb on + strand, within ABID97_RS26385 at 197.959 kb on + strand, within ABID97_RS26385 at 197.959 kb on + strand, within ABID97_RS26385 at 197.959 kb on + strand, within ABID97_RS26385 at 197.960 kb on - strand, within ABID97_RS26385 at 197.960 kb on - strand, within ABID97_RS26385 at 198.228 kb on - strand at 198.341 kb on + strand, within ABID97_RS26390 at 198.738 kb on - strand, within ABID97_RS26390 at 198.795 kb on - strand, within ABID97_RS26390 at 198.942 kb on - strand at 198.950 kb on - strand at 199.054 kb on + strand at 199.054 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 196,942 + ABID97_RS26375 0.86 +0.1 197,050 + +0.5 197,050 + +0.1 197,051 - -1.4 197,051 - -2.1 197,066 - -1.5 197,245 + ABID97_RS26380 0.13 +0.0 197,246 - ABID97_RS26380 0.14 -0.1 197,288 - ABID97_RS26380 0.23 +0.2 197,288 - ABID97_RS26380 0.23 -2.5 197,419 - ABID97_RS26380 0.53 +0.2 197,582 + +1.0 197,583 - -0.5 197,616 - -1.2 197,659 - -1.3 197,817 + -0.3 197,899 + ABID97_RS26385 0.23 +0.7 197,959 + ABID97_RS26385 0.40 +1.8 197,959 + ABID97_RS26385 0.40 +0.1 197,959 + ABID97_RS26385 0.40 -2.9 197,960 - ABID97_RS26385 0.40 +0.2 197,960 - ABID97_RS26385 0.40 +1.5 198,228 - +0.1 198,341 + ABID97_RS26390 0.24 +0.6 198,738 - ABID97_RS26390 0.81 +1.3 198,795 - ABID97_RS26390 0.89 -2.0 198,942 - -1.3 198,950 - +1.1 199,054 + +0.3 199,054 + +0.9
Or see this region's nucleotide sequence