Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26325 and ABID97_RS26330 are separated by 43 nucleotides ABID97_RS26330 and ABID97_RS26335 overlap by 4 nucleotides ABID97_RS26335 and ABID97_RS26340 are separated by 59 nucleotides ABID97_RS26340 and ABID97_RS26345 are separated by 53 nucleotides
ABID97_RS26325: ABID97_RS26325 - 4-hydroxy-tetrahydrodipicolinate synthase, at 188,653 to 189,546
_RS26325
ABID97_RS26330: ABID97_RS26330 - ABC transporter ATP-binding protein, at 189,590 to 190,405
_RS26330
ABID97_RS26335: ABID97_RS26335 - VOC family protein, at 190,402 to 190,803
_RS26335
ABID97_RS26340: ABID97_RS26340 - ABC transporter permease, at 190,863 to 191,633
_RS26340
ABID97_RS26345: ABID97_RS26345 - VOC family protein, at 191,687 to 192,265
_RS26345
Position (kb) 190
191 Strain fitness (log2 ratio) -1
0
1
2
3 at 189.443 kb on + strand, within ABID97_RS26325 at 189.444 kb on - strand, within ABID97_RS26325 at 189.627 kb on + strand at 190.654 kb on + strand, within ABID97_RS26335 at 190.679 kb on + strand, within ABID97_RS26335 at 190.913 kb on - strand at 191.110 kb on + strand, within ABID97_RS26340 at 191.110 kb on - strand, within ABID97_RS26340 at 191.475 kb on + strand, within ABID97_RS26340 at 191.476 kb on - strand, within ABID97_RS26340
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 189,443 + ABID97_RS26325 0.88 -0.6 189,444 - ABID97_RS26325 0.88 -1.1 189,627 + +0.5 190,654 + ABID97_RS26335 0.63 +0.3 190,679 + ABID97_RS26335 0.69 +2.8 190,913 - -0.8 191,110 + ABID97_RS26340 0.32 -1.5 191,110 - ABID97_RS26340 0.32 +0.6 191,475 + ABID97_RS26340 0.79 -1.7 191,476 - ABID97_RS26340 0.80 -0.5
Or see this region's nucleotide sequence